Package org.rcsb.cif.model.generated

Class PdbxReferenceMoleculeRelatedStructures

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxReferenceMoleculeRelatedStructures

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxReferenceMoleculeRelatedStructures
extends BaseCategory

Data items in the PDBX_REFERENCE_MOLECULE_RELATED_STRUCTURES category record details of the structural examples in related databases for this entity.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxReferenceMoleculeRelatedStructures(String name)
PdbxReferenceMoleculeRelatedStructures(String name, int rowCount, Object[] encodedColumns)
PdbxReferenceMoleculeRelatedStructures(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getCitationId()	A link to related reference information in the citation category.
StrColumn	getDbAccession()	The database accession code for the related structure reference.
StrColumn	getDbCode()	The database identifier code for the related structure reference.
StrColumn	getDbName()	The database name for the related structure reference.
StrColumn	getFamilyPrdId()	The value of _pdbx_reference_molecule_related_structures.family_prd_id is a reference to _pdbx_reference_molecule_list.family_prd_id in category PDBX_REFERENCE_MOLECULE_FAMILY_LIST.
StrColumn	getFormula()	The formula for the reference entity.
StrColumn	getName()	The chemical name for the structure entry in the related database
IntColumn	getOrdinal()	The value of _pdbx_reference_molecule_related_structures.ordinal distinguishes related structural data for each entity.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxReferenceMoleculeRelatedStructures

public PdbxReferenceMoleculeRelatedStructures(String name,
                                              Map<String,Column> columns)

PdbxReferenceMoleculeRelatedStructures

public PdbxReferenceMoleculeRelatedStructures(String name,
                                              int rowCount,
                                              Object[] encodedColumns)

PdbxReferenceMoleculeRelatedStructures

public PdbxReferenceMoleculeRelatedStructures(String name)

Method Detail

getFamilyPrdId

public StrColumn getFamilyPrdId()

The value of _pdbx_reference_molecule_related_structures.family_prd_id is a reference to _pdbx_reference_molecule_list.family_prd_id in category PDBX_REFERENCE_MOLECULE_FAMILY_LIST.

Returns:

StrColumn

getOrdinal

public IntColumn getOrdinal()

The value of _pdbx_reference_molecule_related_structures.ordinal distinguishes related structural data for each entity.

Returns:

IntColumn

getDbName

public StrColumn getDbName()

The database name for the related structure reference.

Returns:

StrColumn

getDbCode

public StrColumn getDbCode()

The database identifier code for the related structure reference.

Returns:

StrColumn

getDbAccession

public StrColumn getDbAccession()

The database accession code for the related structure reference.

Returns:

StrColumn

getName

public StrColumn getName()

The chemical name for the structure entry in the related database

Returns:

StrColumn

getFormula

public StrColumn getFormula()

The formula for the reference entity. Formulae are written according to the rules: 1. Only recognised element symbols may be used. 2. Each element symbol is followed by a 'count' number. A count of '1' may be omitted. 3. A space or parenthesis must separate each element symbol and its count, but in general parentheses are not used. 4. The order of elements depends on whether or not carbon is present. If carbon is present, the order should be: C, then H, then the other elements in alphabetical order of their symbol. If carbon is not present, the elements are listed purely in alphabetic order of their symbol. This is the 'Hill' system used by Chemical Abstracts.

Returns:

StrColumn

getCitationId

public StrColumn getCitationId()

A link to related reference information in the citation category.

Returns:

StrColumn