Package org.rcsb.cif.model.generated

Class PdbxReferenceMoleculeAnnotation

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxReferenceMoleculeAnnotation

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxReferenceMoleculeAnnotation
extends BaseCategory

Data items in the PDBX_REFERENCE_MOLECULE_ANNOTATION category specify additional annotation relevant to the molecular entities.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxReferenceMoleculeAnnotation(String name)
PdbxReferenceMoleculeAnnotation(String name, int rowCount, Object[] encodedColumns)
PdbxReferenceMoleculeAnnotation(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getChemCompId()	For entities represented as single molecules, the identifier corresponding to the chemical definition for the molecule.
StrColumn	getFamilyPrdId()	The value of _pdbx_reference_molecule_annotation.family_prd_id is a reference to _pdbx_reference_molecule_list.family_prd_id in category PDBX_REFERENCE_MOLECULE_FAMILY_LIST.
IntColumn	getOrdinal()	This data item distinguishes anotations for this entity.
StrColumn	getPrdId()	This data item is a pointer to _pdbx_reference_molecule.prd_id in the PDB_REFERENCE_MOLECULE category.
StrColumn	getSource()	The source of the annoation for this entity.
StrColumn	getSupport()	Text describing the experimentation or computational evidence for the annotation.
StrColumn	getText()	Text describing the annotation for this entity.
StrColumn	getType()	Type of annotation for this entity.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxReferenceMoleculeAnnotation

public PdbxReferenceMoleculeAnnotation(String name,
                                       Map<String,Column> columns)

PdbxReferenceMoleculeAnnotation

public PdbxReferenceMoleculeAnnotation(String name,
                                       int rowCount,
                                       Object[] encodedColumns)

PdbxReferenceMoleculeAnnotation

public PdbxReferenceMoleculeAnnotation(String name)

Method Detail

getFamilyPrdId

public StrColumn getFamilyPrdId()

The value of _pdbx_reference_molecule_annotation.family_prd_id is a reference to _pdbx_reference_molecule_list.family_prd_id in category PDBX_REFERENCE_MOLECULE_FAMILY_LIST.

Returns:

StrColumn

getPrdId

public StrColumn getPrdId()

This data item is a pointer to _pdbx_reference_molecule.prd_id in the PDB_REFERENCE_MOLECULE category.

Returns:

StrColumn

getOrdinal

public IntColumn getOrdinal()

This data item distinguishes anotations for this entity.

Returns:

IntColumn

getText

public StrColumn getText()

Text describing the annotation for this entity.

Returns:

StrColumn

getType

public StrColumn getType()

Type of annotation for this entity.

Returns:

StrColumn

getSupport

public StrColumn getSupport()

Text describing the experimentation or computational evidence for the annotation.

Returns:

StrColumn

getSource

public StrColumn getSource()

The source of the annoation for this entity.

Returns:

StrColumn

getChemCompId

public StrColumn getChemCompId()

For entities represented as single molecules, the identifier corresponding to the chemical definition for the molecule.

Returns:

StrColumn