Package org.rcsb.cif.model.generated

Class PdbxReferenceLinkedEntityCompLink

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxReferenceLinkedEntityCompLink

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxReferenceLinkedEntityCompLink
extends BaseCategory

Data items in the pdbx_reference_linked_entity_comp_link category enumerate inter-entity linkages between the components of common observed interaction patterns described in the pdbx_reference_linked_entity category.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxReferenceLinkedEntityCompLink(String name)
PdbxReferenceLinkedEntityCompLink(String name, int rowCount, Object[] encodedColumns)
PdbxReferenceLinkedEntityCompLink(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAtomId1()	The atom identifier/name in the first of the two constituents containing the linkage.
StrColumn	getAtomId2()	The atom identifier/name in the second of the two constituents containing the linkage.
StrColumn	getAtomStereoConfig1()	The chiral configuration of the first atom making the linkage.
StrColumn	getAtomStereoConfig2()	The chiral configuration of the second atom making the linkage.
StrColumn	getCompId1()	The component identifier in the first of the two constituents containing the linkage.
StrColumn	getCompId2()	The component identifier in the second of the two constituents containing the linkage.
StrColumn	getDetails()	A description of special aspects of a linkage between these constituents in this linked entity.
StrColumn	getLeavingAtomId1()	The leaving atom identifier/name bonded to the first atom making the linkage.
StrColumn	getLeavingAtomId2()	The leaving atom identifier/name bonded to the second atom making the linkage.
IntColumn	getLinkedEntityId()	The value of _pdbx_reference_linked_entity_comp_link.linked_entity_id is a reference _pdbx_reference_linked_entity_comp_list.linked_entity_id in the pdbx_reference_linked_entity_comp_list category.
IntColumn	getLinkId()	The value of _pdbx_reference_linked_entity_comp_link.link_id uniquely identifies linkages within the linked entity.
IntColumn	getListId1()	The value of _pdbx_reference_linked_entity_comp_link.list_id_1 is a reference _pdbx_reference_linked_entity_comp_list.list_id in the pdbx_reference_linked_entity_comp_list category.
IntColumn	getListId2()	The value of _pdbx_reference_linked_entity_comp_link.list_id_2 is a reference _pdbx_reference_linked_entity_comp_list.list_id in the pdbx_reference_linked_entity_comp_list category.
StrColumn	getValueOrder()	The bond order target for the chemical linkage.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxReferenceLinkedEntityCompLink

public PdbxReferenceLinkedEntityCompLink(String name,
                                         Map<String,Column> columns)

PdbxReferenceLinkedEntityCompLink

public PdbxReferenceLinkedEntityCompLink(String name,
                                         int rowCount,
                                         Object[] encodedColumns)

PdbxReferenceLinkedEntityCompLink

public PdbxReferenceLinkedEntityCompLink(String name)

Method Detail

getLinkedEntityId

public IntColumn getLinkedEntityId()

The value of _pdbx_reference_linked_entity_comp_link.linked_entity_id is a reference _pdbx_reference_linked_entity_comp_list.linked_entity_id in the pdbx_reference_linked_entity_comp_list category.

Returns:

IntColumn

getLinkId

public IntColumn getLinkId()

The value of _pdbx_reference_linked_entity_comp_link.link_id uniquely identifies linkages within the linked entity.

Returns:

IntColumn

getListId1

public IntColumn getListId1()

The value of _pdbx_reference_linked_entity_comp_link.list_id_1 is a reference _pdbx_reference_linked_entity_comp_list.list_id in the pdbx_reference_linked_entity_comp_list category.

Returns:

IntColumn

getListId2

public IntColumn getListId2()

The value of _pdbx_reference_linked_entity_comp_link.list_id_2 is a reference _pdbx_reference_linked_entity_comp_list.list_id in the pdbx_reference_linked_entity_comp_list category.

Returns:

IntColumn

getDetails

public StrColumn getDetails()

A description of special aspects of a linkage between these constituents in this linked entity.

Returns:

StrColumn

getCompId1

public StrColumn getCompId1()

The component identifier in the first of the two constituents containing the linkage.

Returns:

StrColumn

getCompId2

public StrColumn getCompId2()

The component identifier in the second of the two constituents containing the linkage.

Returns:

StrColumn

getAtomId1

public StrColumn getAtomId1()

The atom identifier/name in the first of the two constituents containing the linkage.

Returns:

StrColumn

getAtomId2

public StrColumn getAtomId2()

The atom identifier/name in the second of the two constituents containing the linkage.

Returns:

StrColumn

getLeavingAtomId1

public StrColumn getLeavingAtomId1()

The leaving atom identifier/name bonded to the first atom making the linkage.

Returns:

StrColumn

getAtomStereoConfig1

public StrColumn getAtomStereoConfig1()

The chiral configuration of the first atom making the linkage.

Returns:

StrColumn

getLeavingAtomId2

public StrColumn getLeavingAtomId2()

The leaving atom identifier/name bonded to the second atom making the linkage.

Returns:

StrColumn

getAtomStereoConfig2

public StrColumn getAtomStereoConfig2()

The chiral configuration of the second atom making the linkage.

Returns:

StrColumn

getValueOrder

public StrColumn getValueOrder()

The bond order target for the chemical linkage.

Returns:

StrColumn