Package org.rcsb.cif.model.generated

Class PdbxReferenceEntitySrcNat

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxReferenceEntitySrcNat

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxReferenceEntitySrcNat
extends BaseCategory

Data items in the PDBX_REFERENCE_ENTITY_SRC_NAT category record details of the source from which the entity was obtained.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxReferenceEntitySrcNat(String name)
PdbxReferenceEntitySrcNat(String name, int rowCount, Object[] encodedColumns)
PdbxReferenceEntitySrcNat(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAtcc()	The Americal Tissue Culture Collection code for organism from which the entity was isolated.
StrColumn	getDbCode()	The database code for this source information
StrColumn	getDbName()	The database name for this source information
IntColumn	getOrdinal()	The value of _pdbx_reference_entity_src_nat.ordinal distinguishes source details for this entity.
StrColumn	getOrganismScientific()	The scientific name of the organism from which the entity was isolated.
StrColumn	getPrdId()	The value of _pdbx_reference_entity_src_nat.prd_id is a reference _pdbx_reference_entity_list.prd_id in the PDBX_REFERENCE_ENTITY_LIST category.
StrColumn	getRefEntityId()	The value of _pdbx_reference_entity_src_nat.ref_entity_id is a reference to _pdbx_reference_entity_list.ref_entity_id in PDBX_REFERENCE_ENTITY_LIST category.
StrColumn	getSource()	The data source for this information.
StrColumn	getSourceId()	A identifier within the data source for this information.
StrColumn	getStrain()	The strain of the organism from which the entity was isolated.
StrColumn	getTaxid()	The NCBI TaxId of the organism from which the entity was isolated.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxReferenceEntitySrcNat

public PdbxReferenceEntitySrcNat(String name,
                                 Map<String,Column> columns)

PdbxReferenceEntitySrcNat

public PdbxReferenceEntitySrcNat(String name,
                                 int rowCount,
                                 Object[] encodedColumns)

PdbxReferenceEntitySrcNat

public PdbxReferenceEntitySrcNat(String name)

Method Detail

getPrdId

public StrColumn getPrdId()

The value of _pdbx_reference_entity_src_nat.prd_id is a reference _pdbx_reference_entity_list.prd_id in the PDBX_REFERENCE_ENTITY_LIST category.

Returns:

StrColumn

getRefEntityId

public StrColumn getRefEntityId()

The value of _pdbx_reference_entity_src_nat.ref_entity_id is a reference to _pdbx_reference_entity_list.ref_entity_id in PDBX_REFERENCE_ENTITY_LIST category.

Returns:

StrColumn

getOrdinal

public IntColumn getOrdinal()

The value of _pdbx_reference_entity_src_nat.ordinal distinguishes source details for this entity.

Returns:

IntColumn

getOrganismScientific

public StrColumn getOrganismScientific()

The scientific name of the organism from which the entity was isolated.

Returns:

StrColumn

getStrain

public StrColumn getStrain()

The strain of the organism from which the entity was isolated.

Returns:

StrColumn

getTaxid

public StrColumn getTaxid()

The NCBI TaxId of the organism from which the entity was isolated.

Returns:

StrColumn

getAtcc

public StrColumn getAtcc()

The Americal Tissue Culture Collection code for organism from which the entity was isolated.

Returns:

StrColumn

getDbCode

public StrColumn getDbCode()

The database code for this source information

Returns:

StrColumn

getDbName

public StrColumn getDbName()

The database name for this source information

Returns:

StrColumn

getSource

public StrColumn getSource()

The data source for this information.

Returns:

StrColumn

getSourceId

public StrColumn getSourceId()

A identifier within the data source for this information.

Returns:

StrColumn