Package org.rcsb.cif.model.generated

Class PdbxReferenceEntityPolySeq

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxReferenceEntityPolySeq

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxReferenceEntityPolySeq
extends BaseCategory

Data items in the PDBX_REFERENCE_ENTITY_POLY_SEQ category specify the sequence of monomers in a polymer.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxReferenceEntityPolySeq(String name)
PdbxReferenceEntityPolySeq(String name, int rowCount, Object[] encodedColumns)
PdbxReferenceEntityPolySeq(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getHetero()	A flag to indicate that sequence heterogeneity at this monomer position.
StrColumn	getMonId()	This data item is the chemical component identifier of monomer.
IntColumn	getNum()	The value of _pdbx_reference_entity_poly_seq.num must uniquely and sequentially identify a record in the PDBX_REFERENCE_ENTITY_POLY_SEQ list.
StrColumn	getObserved()	A flag to indicate that this monomer is observed in the instance example.
StrColumn	getParentMonId()	This data item is the chemical component identifier for the parent component corresponding to this monomer.
StrColumn	getPrdId()	The value of _pdbx_reference_entity_poly_seq.prd_id is a reference _pdbx_reference_entity_poly.prd_id in the PDBX_REFERENCE_ENTITY_POLY category.
StrColumn	getRefEntityId()	The value of _pdbx_reference_entity_poly_seq.ref_entity_id is a reference to _pdbx_reference_entity_poly.ref_entity_id in PDBX_REFERENCE_ENTITY_POLY category.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxReferenceEntityPolySeq

public PdbxReferenceEntityPolySeq(String name,
                                  Map<String,Column> columns)

PdbxReferenceEntityPolySeq

public PdbxReferenceEntityPolySeq(String name,
                                  int rowCount,
                                  Object[] encodedColumns)

PdbxReferenceEntityPolySeq

public PdbxReferenceEntityPolySeq(String name)

Method Detail

getPrdId

public StrColumn getPrdId()

The value of _pdbx_reference_entity_poly_seq.prd_id is a reference _pdbx_reference_entity_poly.prd_id in the PDBX_REFERENCE_ENTITY_POLY category.

Returns:

StrColumn

getRefEntityId

public StrColumn getRefEntityId()

The value of _pdbx_reference_entity_poly_seq.ref_entity_id is a reference to _pdbx_reference_entity_poly.ref_entity_id in PDBX_REFERENCE_ENTITY_POLY category.

Returns:

StrColumn

getMonId

public StrColumn getMonId()

This data item is the chemical component identifier of monomer.

Returns:

StrColumn

getParentMonId

public StrColumn getParentMonId()

This data item is the chemical component identifier for the parent component corresponding to this monomer.

Returns:

StrColumn

getNum

public IntColumn getNum()

The value of _pdbx_reference_entity_poly_seq.num must uniquely and sequentially identify a record in the PDBX_REFERENCE_ENTITY_POLY_SEQ list. This value is conforms to author numbering conventions and does not map directly to the numbering conventions used for _entity_poly_seq.num.

Returns:

IntColumn

getObserved

public StrColumn getObserved()

A flag to indicate that this monomer is observed in the instance example.

Returns:

StrColumn

getHetero

public StrColumn getHetero()

A flag to indicate that sequence heterogeneity at this monomer position.

Returns:

StrColumn