Package org.rcsb.cif.model.generated

Class PdbxReferenceEntityLink

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxReferenceEntityLink
extends BaseCategory
    Data items in the PDBX_REFERENCE_ENTITY_LINK category give details about the linkages between entities within reference molecules.

    • Constructor Detail

      • PdbxReferenceEntityLink

        public PdbxReferenceEntityLink​(String name,
                               Map<String,​Column> columns)

      • PdbxReferenceEntityLink

        public PdbxReferenceEntityLink​(String name,
                               int rowCount,
                               Object[] encodedColumns)

      • PdbxReferenceEntityLink

        public PdbxReferenceEntityLink​(String name)

    • Method Detail

      • getLinkId

        public IntColumn getLinkId()
        The value of _pdbx_reference_entity_link.link_id uniquely identifies linkages between entities with a molecule.
        Returns:
        IntColumn

      • getPrdId

        public StrColumn getPrdId()
        The value of _pdbx_reference_entity_link.prd_id is a reference _pdbx_reference_entity_list.prd_id in the PDBX_REFERENCE_ENTITY_LIST category.
        Returns:
        StrColumn

      • getDetails

        public StrColumn getDetails()
        A description of special aspects of a linkage between chemical components in the structure.
        Returns:
        StrColumn

      • getRefEntityId1

        public StrColumn getRefEntityId1()
        The reference entity id of the first of the two entities joined by the linkage. This data item is a pointer to _pdbx_reference_entity_list.ref_entity_id in the PDBX_REFERENCE_ENTITY_LIST category.
        Returns:
        StrColumn

      • getRefEntityId2

        public StrColumn getRefEntityId2()
        The reference entity id of the second of the two entities joined by the linkage. This data item is a pointer to _pdbx_reference_entity_list.ref_entity_id in the PDBX_REFERENCE_ENTITY_LIST category.
        Returns:
        StrColumn

      • getEntitySeqNum1

        public IntColumn getEntitySeqNum1()
        For a polymer entity, the sequence number in the first of the two entities containing the linkage. This data item is a pointer to _pdbx_reference_entity_poly_seq.num in the PDBX_REFERENCE_ENTITY_POLY_SEQ category.
        Returns:
        IntColumn

      • getEntitySeqNum2

        public IntColumn getEntitySeqNum2()
        For a polymer entity, the sequence number in the second of the two entities containing the linkage. This data item is a pointer to _pdbx_reference_entity_poly_seq.num in the PDBX_REFERENCE_ENTITY_POLY_SEQ category.
        Returns:
        IntColumn

      • getCompId1

        public StrColumn getCompId1()
        The component identifier in the first of the two entities containing the linkage. For polymer entities, this data item is a pointer to _pdbx_reference_entity_poly_seq.mon_id in the PDBX_REFERENCE_ENTITY_POLY_SEQ category. For non-polymer entities, this data item is a pointer to _pdbx_reference_entity_nonpoly.chem_comp_id in the PDBX_REFERENCE_ENTITY_NONPOLY category.
        Returns:
        StrColumn

      • getCompId2

        public StrColumn getCompId2()
        The component identifier in the second of the two entities containing the linkage. For polymer entities, this data item is a pointer to _pdbx_reference_entity_poly_seq.mon_id in the PDBX_REFERENCE_ENTITY_POLY_SEQ category. For non-polymer entities, this data item is a pointer to _pdbx_reference_entity_nonpoly.chem_comp_id in the PDBX_REFERENCE_ENTITY_NONPOLY category.
        Returns:
        StrColumn

      • getAtomId1

        public StrColumn getAtomId1()
        The atom identifier/name in the first of the two entities containing the linkage.
        Returns:
        StrColumn

      • getAtomId2

        public StrColumn getAtomId2()
        The atom identifier/name in the second of the two entities containing the linkage.
        Returns:
        StrColumn

      • getValueOrder

        public StrColumn getValueOrder()
        The bond order target for the chemical linkage.
        Returns:
        StrColumn

      • getComponent1

        public IntColumn getComponent1()
        The entity component identifier for the first of two entities containing the linkage.
        Returns:
        IntColumn

      • getComponent2

        public IntColumn getComponent2()
        The entity component identifier for the second of two entities containing the linkage.
        Returns:
        IntColumn

      • getNonpolyResNum1

        public StrColumn getNonpolyResNum1()
        The residue number for the first of two entities containing the linkage.
        Returns:
        StrColumn

      • getNonpolyResNum2

        public StrColumn getNonpolyResNum2()
        The residue number for the second of two entities containing the linkage.
        Returns:
        StrColumn

      • getLinkClass

        public StrColumn getLinkClass()
        A code indicating the entity types involved in the linkage.
        Returns:
        StrColumn