Package org.rcsb.cif.model.generated

Class PdbxPhasingMADSetSite

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxPhasingMADSetSite

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxPhasingMADSetSite
extends BaseCategory

record the details (coordinates etc.) of anomalous scatters.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxPhasingMADSetSite(String name)
PdbxPhasingMADSetSite(String name, int rowCount, Object[] encodedColumns)
PdbxPhasingMADSetSite(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAtomTypeSymbol()	_pdbx_phasing_MAD_set_site.atom_type_symbol records the name of site obtained from MAD phasing.
FloatColumn	getBIso()	_pdbx_phasing_MAD_set_site.b_iso records isotropic temperature factor parameterthe for the site obtained from MAD phasing.
FloatColumn	getBIsoEsd()	_pdbx_phasing_MAD_set_site.b_iso_esd records estimated standard deviation of isotropic temperature factor parameterthe for the site obtained from MAD phasing.
FloatColumn	getCartnX()	_pdbx_phasing_MAD_set_site.Cartn_x records the X Cartesian coordinate of site obtained from MAD phasing.
FloatColumn	getCartnXEsd()	_pdbx_phasing_MAD_set_site.Cartn_x_esd records the estimated standard deviation X Cartesian coordinate of site obtained from MAD phasing.
FloatColumn	getCartnY()	_pdbx_phasing_MAD_set_site.Cartn_y records the Y Cartesian coordinate of site obtained from MAD phasing.
FloatColumn	getCartnYEsd()	_pdbx_phasing_MAD_set_site.Cartn_y_esd records the estimated standard deviation Y Cartesian coordinate of site obtained from MAD phasing.
FloatColumn	getCartnZ()	_pdbx_phasing_MAD_set_site.Cartn_z records the Z Cartesian coordinate of site obtained from MAD phasing.
FloatColumn	getCartnZEsd()	_pdbx_phasing_MAD_set_site.Cartn_z_esd records the estimated standard deviation Z Cartesian coordinate of site obtained from MAD phasing.
FloatColumn	getFractX()	_pdbx_phasing_MAD_set_site.fract_x records the X fractional coordinate of site obtained from MAD phasing.
FloatColumn	getFractXEsd()	_pdbx_phasing_MAD_set_site.fract_x_esd records the estimated standard deviation X fractional coordinate of site obtained from MAD phasing.
FloatColumn	getFractY()	_pdbx_phasing_MAD_set_site.fract_y records the Y fractional coordinate of site obtained from MAD phasing.
FloatColumn	getFractYEsd()	_pdbx_phasing_MAD_set_site.fract_y_esd records the estimated standard deviation Y fractional coordinate of site obtained from MAD phasing.
FloatColumn	getFractZ()	_pdbx_phasing_MAD_set_site.fract_z records the Z fractional coordinate of site obtained from MAD phasing.
FloatColumn	getFractZEsd()	_pdbx_phasing_MAD_set_site.fract_z_esd records the estimated standard deviation Z fractional coordinate of site obtained from MAD phasing.
StrColumn	getId()	_pdbx_phasing_MAD_set_site.id records the number of site obtained from MAD phasing.
FloatColumn	getOccupancy()	_pdbx_phasing_MAD_set_site.occupancy records the fraction of the atom type presented at this site.
FloatColumn	getOccupancyEsd()	_pdbx_phasing_MAD_set_site.occupancy_esd records estimated standard deviation of the fraction of the atom type presented at this site.
FloatColumn	getOccupancyIso()	The relative real isotropic occupancy of the atom type present at this heavy-atom site in a given atom site.
StrColumn	getSetId()	record the phasing set.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxPhasingMADSetSite

public PdbxPhasingMADSetSite(String name,
                             Map<String,Column> columns)

PdbxPhasingMADSetSite

public PdbxPhasingMADSetSite(String name,
                             int rowCount,
                             Object[] encodedColumns)

PdbxPhasingMADSetSite

public PdbxPhasingMADSetSite(String name)

Method Detail

getId

public StrColumn getId()

_pdbx_phasing_MAD_set_site.id records the number of site obtained from MAD phasing.

Returns:

StrColumn

getAtomTypeSymbol

public StrColumn getAtomTypeSymbol()

_pdbx_phasing_MAD_set_site.atom_type_symbol records the name of site obtained from MAD phasing.

Returns:

StrColumn

getCartnX

public FloatColumn getCartnX()

_pdbx_phasing_MAD_set_site.Cartn_x records the X Cartesian coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getCartnY

public FloatColumn getCartnY()

_pdbx_phasing_MAD_set_site.Cartn_y records the Y Cartesian coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getCartnZ

public FloatColumn getCartnZ()

_pdbx_phasing_MAD_set_site.Cartn_z records the Z Cartesian coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getCartnXEsd

public FloatColumn getCartnXEsd()

_pdbx_phasing_MAD_set_site.Cartn_x_esd records the estimated standard deviation X Cartesian coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getCartnYEsd

public FloatColumn getCartnYEsd()

_pdbx_phasing_MAD_set_site.Cartn_y_esd records the estimated standard deviation Y Cartesian coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getCartnZEsd

public FloatColumn getCartnZEsd()

_pdbx_phasing_MAD_set_site.Cartn_z_esd records the estimated standard deviation Z Cartesian coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getFractX

public FloatColumn getFractX()

_pdbx_phasing_MAD_set_site.fract_x records the X fractional coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getFractY

public FloatColumn getFractY()

_pdbx_phasing_MAD_set_site.fract_y records the Y fractional coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getFractZ

public FloatColumn getFractZ()

_pdbx_phasing_MAD_set_site.fract_z records the Z fractional coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getFractXEsd

public FloatColumn getFractXEsd()

_pdbx_phasing_MAD_set_site.fract_x_esd records the estimated standard deviation X fractional coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getFractYEsd

public FloatColumn getFractYEsd()

_pdbx_phasing_MAD_set_site.fract_y_esd records the estimated standard deviation Y fractional coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getFractZEsd

public FloatColumn getFractZEsd()

_pdbx_phasing_MAD_set_site.fract_z_esd records the estimated standard deviation Z fractional coordinate of site obtained from MAD phasing.

Returns:

FloatColumn

getBIso

public FloatColumn getBIso()

_pdbx_phasing_MAD_set_site.b_iso records isotropic temperature factor parameterthe for the site obtained from MAD phasing.

Returns:

FloatColumn

getBIsoEsd

public FloatColumn getBIsoEsd()

_pdbx_phasing_MAD_set_site.b_iso_esd records estimated standard deviation of isotropic temperature factor parameterthe for the site obtained from MAD phasing.

Returns:

FloatColumn

getOccupancy

public FloatColumn getOccupancy()

_pdbx_phasing_MAD_set_site.occupancy records the fraction of the atom type presented at this site.

Returns:

FloatColumn

getOccupancyEsd

public FloatColumn getOccupancyEsd()

_pdbx_phasing_MAD_set_site.occupancy_esd records estimated standard deviation of the fraction of the atom type presented at this site.

Returns:

FloatColumn

getSetId

public StrColumn getSetId()

record the phasing set.

Returns:

StrColumn

getOccupancyIso

public FloatColumn getOccupancyIso()

The relative real isotropic occupancy of the atom type present at this heavy-atom site in a given atom site.

Returns:

FloatColumn