Package org.rcsb.cif.model.generated

Class PdbxNonstandardList

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxNonstandardList

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxNonstandardList
extends BaseCategory

The information in this category is exclusively used to store the HET records of a PDB file. This record will be generated by the PROGRAM.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxNonstandardList(String name)
PdbxNonstandardList(String name, int rowCount, Object[] encodedColumns)
PdbxNonstandardList(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	Chain id of the nonstandard group used by the author.
StrColumn	getAuthSeqId()	Residue number of the nonstandard group used by the author.
StrColumn	getId()	The value of _pdbx_nonstandard_list.id must uniquely identify each item in the PDBX_NONSTANDARD_LIST list.
StrColumn	getInsCode()	Insertion code of het group.
StrColumn	getLabelAsymId()	Chain ID of het group.
IntColumn	getLabelSeqId()	Residue id of het group.
StrColumn	getLabelSeqNum()	Residue number of het group.
IntColumn	getNumberAtomsNh()	The number of non-hydrogen atoms in the het group.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxNonstandardList

public PdbxNonstandardList(String name,
                           Map<String,Column> columns)

PdbxNonstandardList

public PdbxNonstandardList(String name,
                           int rowCount,
                           Object[] encodedColumns)

PdbxNonstandardList

public PdbxNonstandardList(String name)

Method Detail

getId

public StrColumn getId()

The value of _pdbx_nonstandard_list.id must uniquely identify each item in the PDBX_NONSTANDARD_LIST list. For protein polymer entities, this is the three-letter code for amino acids. For nucleic acid polymer entities, this is the one-letter code for the bases.

Returns:

StrColumn

getAuthAsymId

public StrColumn getAuthAsymId()

Chain id of the nonstandard group used by the author.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

Residue number of the nonstandard group used by the author.

Returns:

StrColumn

getLabelAsymId

public StrColumn getLabelAsymId()

Chain ID of het group.

Returns:

StrColumn

getLabelSeqNum

public StrColumn getLabelSeqNum()

Residue number of het group.

Returns:

StrColumn

getLabelSeqId

public IntColumn getLabelSeqId()

Residue id of het group.

Returns:

IntColumn

getInsCode

public StrColumn getInsCode()

Insertion code of het group.

Returns:

StrColumn

getNumberAtomsNh

public IntColumn getNumberAtomsNh()

The number of non-hydrogen atoms in the het group.

Returns:

IntColumn