Package org.rcsb.cif.model.generated

Class PdbxLinkedEntityLinkList

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxLinkedEntityLinkList
extends BaseCategory
    Data items in the PDBX_LINKED_ENTITY_LINK_LIST category give details about the linkages with molecules represented as linked entities.

    • Constructor Detail

      • PdbxLinkedEntityLinkList

        public PdbxLinkedEntityLinkList​(String name,
                                Map<String,​Column> columns)

      • PdbxLinkedEntityLinkList

        public PdbxLinkedEntityLinkList​(String name,
                                int rowCount,
                                Object[] encodedColumns)

      • PdbxLinkedEntityLinkList

        public PdbxLinkedEntityLinkList​(String name)

    • Method Detail

      • getLinkId

        public IntColumn getLinkId()
        The value of _pdbx_linked_entity_link_list.link_id uniquely identifies linkages between entities with a molecule.
        Returns:
        IntColumn

      • getLinkedEntityId

        public StrColumn getLinkedEntityId()
        The value of _pdbx_linked_entity_link_list.linked_entity_id is a reference _pdbx_linked_entity_list.linked_entity_id in the PDBX_LINKED_ENTITY_LIST category.
        Returns:
        StrColumn

      • getDetails

        public StrColumn getDetails()
        A description of special aspects of a linkage between these entities in this molecule.
        Returns:
        StrColumn

      • getEntityId1

        public StrColumn getEntityId1()
        The entity id of the first of the two entities joined by the linkage. This data item is a pointer to _pdbx_linked_entity_list.entity_id in the PDBX_LINKED_ENTITY_LIST category.
        Returns:
        StrColumn

      • getEntityId2

        public StrColumn getEntityId2()
        The entity id of the second of the two entities joined by the linkage. This data item is a pointer to _pdbx_linked_entity_list.entity_id in the PDBX_LINKED_ENTITY_LIST category.
        Returns:
        StrColumn

      • getEntitySeqNum1

        public IntColumn getEntitySeqNum1()
        For a polymer entity, the sequence number in the first of the two entities containing the linkage. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
        Returns:
        IntColumn

      • getEntitySeqNum2

        public IntColumn getEntitySeqNum2()
        For a polymer entity, the sequence number in the second of the two entities containing the linkage. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
        Returns:
        IntColumn

      • getCompId1

        public StrColumn getCompId1()
        The component identifier in the first of the two entities containing the linkage. For polymer entities, this data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category. For non-polymer entities, this data item is a pointer to _chem_comp.id in the CHEM_COMP category.
        Returns:
        StrColumn

      • getCompId2

        public StrColumn getCompId2()
        The component identifier in the second of the two entities containing the linkage. For polymer entities, this data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category. For non-polymer entities, this data item is a pointer to _chem_comp.id in the CHEM_COMP category.
        Returns:
        StrColumn

      • getAtomId1

        public StrColumn getAtomId1()
        The atom identifier/name in the first of the two entities containing the linkage.
        Returns:
        StrColumn

      • getAtomId2

        public StrColumn getAtomId2()
        The atom identifier/name in the second of the two entities containing the linkage.
        Returns:
        StrColumn

      • getValueOrder

        public StrColumn getValueOrder()
        The bond order target for the chemical linkage.
        Returns:
        StrColumn

      • getComponent1

        public IntColumn getComponent1()
        The entity component identifier for the first of two entities containing the linkage.
        Returns:
        IntColumn

      • getComponent2

        public IntColumn getComponent2()
        The entity component identifier for the second of two entities containing the linkage.
        Returns:
        IntColumn

      • getLinkClass

        public StrColumn getLinkClass()
        A code indicating the entity types involved in the linkage.
        Returns:
        StrColumn