Package org.rcsb.cif.model.generated

Class PdbxEntitySrcGenRefold

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxEntitySrcGenRefold

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxEntitySrcGenRefold
extends BaseCategory

This category contains details for the refolding steps used in the overall protein production process.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxEntitySrcGenRefold(String name)
PdbxEntitySrcGenRefold(String name, int rowCount, Object[] encodedColumns)
PdbxEntitySrcGenRefold(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDate()	The date of this production step.
StrColumn	getDenatureBufferId()	This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category.
StrColumn	getDetails()	String value containing details of the refolding.
StrColumn	getEndConstructId()	This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category.
StrColumn	getEntityId()	The value of _pdbx_entity_src_gen_refold.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined.
StrColumn	getEntryId()	The value of _pdbx_entity_src_gen_refold.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined.
IntColumn	getNextStepId()	This item unique identifier for the next production step.
StrColumn	getRefoldBufferId()	This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category.
StrColumn	getRobotId()	This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
IntColumn	getStepId()	This item is the unique identifier for this refolding step.
StrColumn	getStorageBufferId()	This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category.
FloatColumn	getTemperature()	The temperature in degrees celsius at which the protein was refolded.
FloatColumn	getTime()	The time in hours over which the protein was refolded.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxEntitySrcGenRefold

public PdbxEntitySrcGenRefold(String name,
                              Map<String,Column> columns)

PdbxEntitySrcGenRefold

public PdbxEntitySrcGenRefold(String name,
                              int rowCount,
                              Object[] encodedColumns)

PdbxEntitySrcGenRefold

public PdbxEntitySrcGenRefold(String name)

Method Detail

getEntryId

public StrColumn getEntryId()

The value of _pdbx_entity_src_gen_refold.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

The value of _pdbx_entity_src_gen_refold.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.

Returns:

StrColumn

getStepId

public IntColumn getStepId()

This item is the unique identifier for this refolding step.

Returns:

IntColumn

getNextStepId

public IntColumn getNextStepId()

This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.

Returns:

IntColumn

getEndConstructId

public StrColumn getEndConstructId()

This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced sequence is expected to be the amino acid sequence of the expressed product after the refolding step.

Returns:

StrColumn

getRobotId

public StrColumn getRobotId()

This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.

Returns:

StrColumn

getDate

public StrColumn getDate()

The date of this production step.

Returns:

StrColumn

getDenatureBufferId

public StrColumn getDenatureBufferId()

This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the protein was denatured.

Returns:

StrColumn

getRefoldBufferId

public StrColumn getRefoldBufferId()

This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the protein was refolded.

Returns:

StrColumn

getTemperature

public FloatColumn getTemperature()

The temperature in degrees celsius at which the protein was refolded.

Returns:

FloatColumn

getTime

public FloatColumn getTime()

The time in hours over which the protein was refolded.

Returns:

FloatColumn

getStorageBufferId

public StrColumn getStorageBufferId()

This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the refolded protein was stored.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

String value containing details of the refolding.

Returns:

StrColumn