Package org.rcsb.cif.model.generated

Class PdbxEntitySrcGenProteolysis

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxEntitySrcGenProteolysis

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxEntitySrcGenProteolysis
extends BaseCategory

This category contains details for the protein purification tag removal steps used in the overall protein production process

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxEntitySrcGenProteolysis(String name)
PdbxEntitySrcGenProteolysis(String name, int rowCount, Object[] encodedColumns)
PdbxEntitySrcGenProteolysis(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getCleavageBufferId()	This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category.
FloatColumn	getCleavageTemperature()	The temperature in degrees celsius at which the cleavage was performed.
FloatColumn	getCleavageTime()	The time in minutes for the cleavage reaction
StrColumn	getDate()	The date of production step.
StrColumn	getDetails()	Details of this tag removal step.
StrColumn	getEndConstructId()	This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category.
StrColumn	getEntityId()	The value of _pdbx_entity_src_gen_proteolysis.entity_id uniquely identifies each protein contained in the project target complex proteins whose structure is to be determined.
StrColumn	getEntryId()	The value of _pdbx_entity_src_gen_proteolysis.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined.
IntColumn	getNextStepId()	This item unique identifier for the next production step.
StrColumn	getProtease()	The name of the protease used for cleavage.
FloatColumn	getProteinProteaseRatio()	The ratio of protein to protease used for the cleavage.
StrColumn	getRobotId()	This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
IntColumn	getStepId()	This item is the unique identifier for this tag removal step.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxEntitySrcGenProteolysis

public PdbxEntitySrcGenProteolysis(String name,
                                   Map<String,Column> columns)

PdbxEntitySrcGenProteolysis

public PdbxEntitySrcGenProteolysis(String name,
                                   int rowCount,
                                   Object[] encodedColumns)

PdbxEntitySrcGenProteolysis

public PdbxEntitySrcGenProteolysis(String name)

Method Detail

getEntryId

public StrColumn getEntryId()

The value of _pdbx_entity_src_gen_proteolysis.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

The value of _pdbx_entity_src_gen_proteolysis.entity_id uniquely identifies each protein contained in the project target complex proteins whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.

Returns:

StrColumn

getStepId

public IntColumn getStepId()

This item is the unique identifier for this tag removal step.

Returns:

IntColumn

getNextStepId

public IntColumn getNextStepId()

This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.

Returns:

IntColumn

getEndConstructId

public StrColumn getEndConstructId()

This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced sequence is expected to be the amino acid sequence of the expressed product after the proteolysis step.

Returns:

StrColumn

getRobotId

public StrColumn getRobotId()

This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.

Returns:

StrColumn

getDate

public StrColumn getDate()

The date of production step.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

Details of this tag removal step.

Returns:

StrColumn

getProtease

public StrColumn getProtease()

The name of the protease used for cleavage.

Returns:

StrColumn

getProteinProteaseRatio

public FloatColumn getProteinProteaseRatio()

The ratio of protein to protease used for the cleavage. = mol protein / mol protease

Returns:

FloatColumn

getCleavageBufferId

public StrColumn getCleavageBufferId()

This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the cleavage was performed.

Returns:

StrColumn

getCleavageTemperature

public FloatColumn getCleavageTemperature()

The temperature in degrees celsius at which the cleavage was performed.

Returns:

FloatColumn

getCleavageTime

public FloatColumn getCleavageTime()

The time in minutes for the cleavage reaction

Returns:

FloatColumn