Package org.rcsb.cif.model.generated

Class PdbxEntitySrcGenLysis

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxEntitySrcGenLysis

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxEntitySrcGenLysis
extends BaseCategory

This category contains details for the cell lysis steps used in the overall protein production process.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxEntitySrcGenLysis(String name)
PdbxEntitySrcGenLysis(String name, int rowCount, Object[] encodedColumns)
PdbxEntitySrcGenLysis(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getBufferId()	This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category.
FloatColumn	getBufferVolume()	The volume in milliliters of buffer in which the lysis was performed.
StrColumn	getDate()	The date of this production step.
StrColumn	getDetails()	String value containing details of the lysis protocol.
StrColumn	getEndConstructId()	This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category.
StrColumn	getEntityId()	The value of _pdbx_entity_src_gen_lysis.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined.
StrColumn	getEntryId()	The value of _pdbx_entity_src_gen_lysis.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined.
StrColumn	getMethod()	The lysis method.
IntColumn	getNextStepId()	This item unique identifier for the next production step.
StrColumn	getRobotId()	This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
IntColumn	getStepId()	This item is the unique identifier for this lysis step.
FloatColumn	getTemperature()	The temperature in degrees celsius at which the lysis was performed.
FloatColumn	getTime()	The time in seconds of the lysis experiment.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxEntitySrcGenLysis

public PdbxEntitySrcGenLysis(String name,
                             Map<String,Column> columns)

PdbxEntitySrcGenLysis

public PdbxEntitySrcGenLysis(String name,
                             int rowCount,
                             Object[] encodedColumns)

PdbxEntitySrcGenLysis

public PdbxEntitySrcGenLysis(String name)

Method Detail

getEntryId

public StrColumn getEntryId()

The value of _pdbx_entity_src_gen_lysis.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

The value of _pdbx_entity_src_gen_lysis.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.

Returns:

StrColumn

getStepId

public IntColumn getStepId()

This item is the unique identifier for this lysis step.

Returns:

IntColumn

getNextStepId

public IntColumn getNextStepId()

This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.

Returns:

IntColumn

getEndConstructId

public StrColumn getEndConstructId()

This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced sequence is expected to be the amino acid sequence of the expressed product after lysis.

Returns:

StrColumn

getRobotId

public StrColumn getRobotId()

This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.

Returns:

StrColumn

getDate

public StrColumn getDate()

The date of this production step.

Returns:

StrColumn

getMethod

public StrColumn getMethod()

The lysis method.

Returns:

StrColumn

getBufferId

public StrColumn getBufferId()

This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the lysis was performed.

Returns:

StrColumn

getBufferVolume

public FloatColumn getBufferVolume()

The volume in milliliters of buffer in which the lysis was performed.

Returns:

FloatColumn

getTemperature

public FloatColumn getTemperature()

The temperature in degrees celsius at which the lysis was performed.

Returns:

FloatColumn

getTime

public FloatColumn getTime()

The time in seconds of the lysis experiment.

Returns:

FloatColumn

getDetails

public StrColumn getDetails()

String value containing details of the lysis protocol.

Returns:

StrColumn