Package org.rcsb.cif.model.generated

Class PdbxEntitySrcGenFract

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxEntitySrcGenFract

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxEntitySrcGenFract
extends BaseCategory

This category contains details for the fraction steps used in the overall protein production process. Examples of fractionation steps are centrifugation and magnetic bead pull-down purification.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxEntitySrcGenFract(String name)
PdbxEntitySrcGenFract(String name, int rowCount, Object[] encodedColumns)
PdbxEntitySrcGenFract(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDate()	The date of this production step.
StrColumn	getDetails()	String value containing details of the fractionation.
StrColumn	getEndConstructId()	This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category.
StrColumn	getEntityId()	The value of _pdbx_entity_src_gen_fract.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined.
StrColumn	getEntryId()	The value of _pdbx_entity_src_gen_fract.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined.
StrColumn	getMethod()	This item describes the method of fractionation.
IntColumn	getNextStepId()	This item unique identifier for the next production step.
StrColumn	getProteinLocation()	The fraction containing the protein of interest.
FloatColumn	getProteinVolume()	The volume of the fraction containing the protein.
FloatColumn	getProteinYield()	The yield in milligrams of protein from the fractionation.
StrColumn	getProteinYieldMethod()	The method used to determine the yield
StrColumn	getRobotId()	This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
IntColumn	getStepId()	This item is the unique identifier for this fractionation step.
FloatColumn	getTemperature()	The temperature in degrees celsius at which the fractionation was performed.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxEntitySrcGenFract

public PdbxEntitySrcGenFract(String name,
                             Map<String,Column> columns)

PdbxEntitySrcGenFract

public PdbxEntitySrcGenFract(String name,
                             int rowCount,
                             Object[] encodedColumns)

PdbxEntitySrcGenFract

public PdbxEntitySrcGenFract(String name)

Method Detail

getEntryId

public StrColumn getEntryId()

The value of _pdbx_entity_src_gen_fract.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

The value of _pdbx_entity_src_gen_fract.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.

Returns:

StrColumn

getStepId

public IntColumn getStepId()

This item is the unique identifier for this fractionation step.

Returns:

IntColumn

getNextStepId

public IntColumn getNextStepId()

This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.

Returns:

IntColumn

getEndConstructId

public StrColumn getEndConstructId()

This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced sequence is expected to be the amino acid sequence of the expressed product after the fractionation step.

Returns:

StrColumn

getRobotId

public StrColumn getRobotId()

This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.

Returns:

StrColumn

getDate

public StrColumn getDate()

The date of this production step.

Returns:

StrColumn

getMethod

public StrColumn getMethod()

This item describes the method of fractionation.

Returns:

StrColumn

getTemperature

public FloatColumn getTemperature()

The temperature in degrees celsius at which the fractionation was performed.

Returns:

FloatColumn

getDetails

public StrColumn getDetails()

String value containing details of the fractionation.

Returns:

StrColumn

getProteinLocation

public StrColumn getProteinLocation()

The fraction containing the protein of interest.

Returns:

StrColumn

getProteinVolume

public FloatColumn getProteinVolume()

The volume of the fraction containing the protein.

Returns:

FloatColumn

getProteinYield

public FloatColumn getProteinYield()

The yield in milligrams of protein from the fractionation.

Returns:

FloatColumn

getProteinYieldMethod

public StrColumn getProteinYieldMethod()

The method used to determine the yield

Returns:

StrColumn