Package org.rcsb.cif.model.generated

Class PdbxEntitySrcGenCloneLigation

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxEntitySrcGenCloneLigation

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxEntitySrcGenCloneLigation
extends BaseCategory

This category contains details for the ligation-based cloning steps used in the overall protein production process. _pdbx_entity_src_gen_clone_ligation.clone_step_id in this category must point at a defined _pdbx_entity_src_gen_clone.step_id. The details in PDBX_ENTITY_SRC_GEN_CLONE_LIGATION extend the details in PDBX_ENTITY_SRC_GEN_CLONE to cover ligation dependent cloning steps.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxEntitySrcGenCloneLigation(String name)
PdbxEntitySrcGenCloneLigation(String name, int rowCount, Object[] encodedColumns)
PdbxEntitySrcGenCloneLigation(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getCleavageEnzymes()	The names of the enzymes used to cleave the vector.
StrColumn	getDetails()	Any details to be associated with this ligation step, e.g.
StrColumn	getEntityId()	This item is a pointer to _pdbx_entity_src_gen_clone.entity_id in the PDBX_ENTITY_SRC_GEN_CLONE category.
StrColumn	getEntryId()	This item is a pointer to _pdbx_entity_src_gen_clone.entry_id in the PDBX_ENTITY_SRC_GEN_CLONE category.
StrColumn	getLigationEnzymes()	The names of the enzymes used to ligate the gene into the cleaved vector.
IntColumn	getStepId()	This item is a pointer to _pdbx_entity_src_gen_clone.step_id in the PDBX_ENTITY_SRC_GEN_CLONE category.
FloatColumn	getTemperature()	The temperature at which the ligation experiment was performed, in degrees celsius.
IntColumn	getTime()	The duration of the ligation reaction in minutes.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxEntitySrcGenCloneLigation

public PdbxEntitySrcGenCloneLigation(String name,
                                     Map<String,Column> columns)

PdbxEntitySrcGenCloneLigation

public PdbxEntitySrcGenCloneLigation(String name,
                                     int rowCount,
                                     Object[] encodedColumns)

PdbxEntitySrcGenCloneLigation

public PdbxEntitySrcGenCloneLigation(String name)

Method Detail

getEntryId

public StrColumn getEntryId()

This item is a pointer to _pdbx_entity_src_gen_clone.entry_id in the PDBX_ENTITY_SRC_GEN_CLONE category.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

This item is a pointer to _pdbx_entity_src_gen_clone.entity_id in the PDBX_ENTITY_SRC_GEN_CLONE category.

Returns:

StrColumn

getStepId

public IntColumn getStepId()

This item is a pointer to _pdbx_entity_src_gen_clone.step_id in the PDBX_ENTITY_SRC_GEN_CLONE category.

Returns:

IntColumn

getCleavageEnzymes

public StrColumn getCleavageEnzymes()

The names of the enzymes used to cleave the vector. In addition an enzyme used to blunt the cut ends, etc., should be named here.

Returns:

StrColumn

getLigationEnzymes

public StrColumn getLigationEnzymes()

The names of the enzymes used to ligate the gene into the cleaved vector.

Returns:

StrColumn

getTemperature

public FloatColumn getTemperature()

The temperature at which the ligation experiment was performed, in degrees celsius.

Returns:

FloatColumn

getTime

public IntColumn getTime()

The duration of the ligation reaction in minutes.

Returns:

IntColumn

getDetails

public StrColumn getDetails()

Any details to be associated with this ligation step, e.g. the protocol.

Returns:

StrColumn