Package org.rcsb.cif.model.generated

Class PdbxEntitySrcGenChrom

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxEntitySrcGenChrom
extends BaseCategory
    This category contains details for the chromatographic steps used in the purification of the protein.

    • Constructor Detail

      • PdbxEntitySrcGenChrom

        public PdbxEntitySrcGenChrom​(String name,
                             int rowCount,
                             Object[] encodedColumns)

      • PdbxEntitySrcGenChrom

        public PdbxEntitySrcGenChrom​(String name)

    • Method Detail

      • getEntryId

        public StrColumn getEntryId()
        The value of _pdbx_entity_src_gen_chrom.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.
        Returns:
        StrColumn

      • getEntityId

        public StrColumn getEntityId()
        The value of _pdbx_entity_src_gen_chrom.entity_id uniquely identifies each protein contained in the project target complex proteins whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.
        Returns:
        StrColumn

      • getStepId

        public IntColumn getStepId()
        This item is the unique identifier for this chromatography step.
        Returns:
        IntColumn

      • getNextStepId

        public IntColumn getNextStepId()
        This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.
        Returns:
        IntColumn

      • getEndConstructId

        public StrColumn getEndConstructId()
        This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced sequence is expected to be the amino acid sequence of the expressed product after the chromatography step.
        Returns:
        StrColumn

      • getRobotId

        public StrColumn getRobotId()
        This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
        Returns:
        StrColumn

      • getDate

        public StrColumn getDate()
        The date of production step.
        Returns:
        StrColumn

      • getColumnType

        public StrColumn getColumnType()
        The type of column used in this step.
        Returns:
        StrColumn

      • getColumnVolume

        public FloatColumn getColumnVolume()
        The volume of the column used in this step.
        Returns:
        FloatColumn

      • getColumnTemperature

        public FloatColumn getColumnTemperature()
        The temperature in degrees celsius at which this column was run.
        Returns:
        FloatColumn

      • getEquilibrationBufferId

        public StrColumn getEquilibrationBufferId()
        This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the column was equilibrated.
        Returns:
        StrColumn

      • getFlowRate

        public FloatColumn getFlowRate()
        The rate at which the equilibration buffer flowed through the column.
        Returns:
        FloatColumn

      • getElutionBufferId

        public StrColumn getElutionBufferId()
        This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that with which the protein was eluted.
        Returns:
        StrColumn

      • getElutionProtocol

        public StrColumn getElutionProtocol()
        Details of the elution protocol.
        Returns:
        StrColumn

      • getSamplePrepDetails

        public StrColumn getSamplePrepDetails()
        Details of the sample preparation prior to running the column.
        Returns:
        StrColumn

      • getSampleVolume

        public FloatColumn getSampleVolume()
        The volume of protein solution run on the column.
        Returns:
        FloatColumn

      • getSampleConcentration

        public FloatColumn getSampleConcentration()
        The concentration of the protein solution put onto the column.
        Returns:
        FloatColumn

      • getSampleConcMethod

        public StrColumn getSampleConcMethod()
        The method used to determine the concentration of the protein solution put onto the column.
        Returns:
        StrColumn

      • getVolumePooledFractions

        public FloatColumn getVolumePooledFractions()
        The total volume of all the fractions pooled to give the purified protein solution.
        Returns:
        FloatColumn

      • getYieldPooledFractions

        public FloatColumn getYieldPooledFractions()
        The yield in milligrams of protein recovered in the pooled fractions.
        Returns:
        FloatColumn

      • getYieldMethod

        public StrColumn getYieldMethod()
        The method used to determine the yield
        Returns:
        StrColumn

      • getPostTreatment

        public StrColumn getPostTreatment()
        Details of any post-chromatographic treatment of the protein sample.
        Returns:
        StrColumn