Package org.rcsb.cif.model.generated

Class PdbxEntityPolyCompLinkList

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxEntityPolyCompLinkList

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxEntityPolyCompLinkList
extends BaseCategory

Data items in the PDBX_ENTITY_POLY_COMP_LINK_LIST category enumerate the the linkages between components within the polymer entity.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxEntityPolyCompLinkList(String name)
PdbxEntityPolyCompLinkList(String name, int rowCount, Object[] encodedColumns)
PdbxEntityPolyCompLinkList(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAtomId1()	The atom identifier/name for the first atom making the linkage.
StrColumn	getAtomId2()	The atom identifier/name for the second atom making the linkage.
StrColumn	getAtomStereoConfig1()	The chiral configuration of the first atom making the linkage.
StrColumn	getAtomStereoConfig2()	The chiral configuration of the second atom making the linkage.
StrColumn	getCompId1()	The component identifier for the first component making the linkage.
StrColumn	getCompId2()	The component identifier for the second component making the linkage.
StrColumn	getDetails()	A description of special aspects of this linkage.
IntColumn	getEntityCompNum1()	The component number for the first component making the linkage.
IntColumn	getEntityCompNum2()	The component number for the second component making the linkage.
StrColumn	getEntityId()	The entity id for this branched entity.
StrColumn	getLeavingAtomId1()	The leaving atom identifier/name bonded to the first atom making the linkage.
StrColumn	getLeavingAtomId2()	The leaving atom identifier/name bonded to the second atom making the linkage.
IntColumn	getLinkId()	The value of _pdbx_entity_poly_comp_link_list.link_id uniquely identifies linkages within the branched entity.
StrColumn	getValueOrder()	The bond order target for the chemical linkage.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxEntityPolyCompLinkList

public PdbxEntityPolyCompLinkList(String name,
                                  Map<String,Column> columns)

PdbxEntityPolyCompLinkList

public PdbxEntityPolyCompLinkList(String name,
                                  int rowCount,
                                  Object[] encodedColumns)

PdbxEntityPolyCompLinkList

public PdbxEntityPolyCompLinkList(String name)

Method Detail

getLinkId

public IntColumn getLinkId()

The value of _pdbx_entity_poly_comp_link_list.link_id uniquely identifies linkages within the branched entity.

Returns:

IntColumn

getDetails

public StrColumn getDetails()

A description of special aspects of this linkage.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

The entity id for this branched entity. This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getEntityCompNum1

public IntColumn getEntityCompNum1()

The component number for the first component making the linkage. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getEntityCompNum2

public IntColumn getEntityCompNum2()

The component number for the second component making the linkage. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getCompId1

public StrColumn getCompId1()

The component identifier for the first component making the linkage. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getCompId2

public StrColumn getCompId2()

The component identifier for the second component making the linkage. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getAtomId1

public StrColumn getAtomId1()

The atom identifier/name for the first atom making the linkage.

Returns:

StrColumn

getLeavingAtomId1

public StrColumn getLeavingAtomId1()

The leaving atom identifier/name bonded to the first atom making the linkage.

Returns:

StrColumn

getAtomStereoConfig1

public StrColumn getAtomStereoConfig1()

The chiral configuration of the first atom making the linkage.

Returns:

StrColumn

getAtomId2

public StrColumn getAtomId2()

The atom identifier/name for the second atom making the linkage.

Returns:

StrColumn

getLeavingAtomId2

public StrColumn getLeavingAtomId2()

The leaving atom identifier/name bonded to the second atom making the linkage.

Returns:

StrColumn

getAtomStereoConfig2

public StrColumn getAtomStereoConfig2()

The chiral configuration of the second atom making the linkage.

Returns:

StrColumn

getValueOrder

public StrColumn getValueOrder()

The bond order target for the chemical linkage.

Returns:

StrColumn