Package org.rcsb.cif.model.generated

Class PdbxDistantSolventAtoms

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxDistantSolventAtoms

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxDistantSolventAtoms
extends BaseCategory

Data items in the PDBX_DISTANT_SOLVENT_ATOMS category list the solvent atoms remote from any macromolecule.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxDistantSolventAtoms(String name)
PdbxDistantSolventAtoms(String name, int rowCount, Object[] encodedColumns)
PdbxDistantSolventAtoms(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	Part of the identifier for the distant solvent atom.
StrColumn	getAuthAtomId()	Part of the identifier for the distant solvent atom.
StrColumn	getAuthCompId()	Part of the identifier for the distant solvent atom.
StrColumn	getAuthSeqId()	Part of the identifier for the distant solvent atom.
IntColumn	getId()	The value of _pdbx_distant_solvent_atoms.id must uniquely identify each item in the PDBX_DISTANT_SOLVENT_ATOMS list.
StrColumn	getLabelAltId()	Part of the identifier for the distant solvent atom.
StrColumn	getLabelAsymId()	Part of the identifier for the distant solvent atom.
StrColumn	getLabelAtomId()	Part of the identifier for the distant solvent atom.
StrColumn	getLabelCompId()	Part of the identifier for the distant solvent atom.
IntColumn	getLabelSeqId()	Part of the identifier for the distant solvent atom.
FloatColumn	getNeighborLigandDistance()	Distance to closest neighboring ligand or solvent atom.
FloatColumn	getNeighborMacromoleculeDistance()	Distance to closest neighboring macromolecule atom.
StrColumn	getPDBInsCode()	Part of the identifier for the distant solvent atom.
IntColumn	getPDBModelNum()	Part of the identifier for the distant solvent atom.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxDistantSolventAtoms

public PdbxDistantSolventAtoms(String name,
                               Map<String,Column> columns)

PdbxDistantSolventAtoms

public PdbxDistantSolventAtoms(String name,
                               int rowCount,
                               Object[] encodedColumns)

PdbxDistantSolventAtoms

public PdbxDistantSolventAtoms(String name)

Method Detail

getId

public IntColumn getId()

The value of _pdbx_distant_solvent_atoms.id must uniquely identify each item in the PDBX_DISTANT_SOLVENT_ATOMS list. This is an integer serial number.

Returns:

IntColumn

getPDBModelNum

public IntColumn getPDBModelNum()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthAtomId

public StrColumn getAuthAtomId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthCompId

public StrColumn getAuthCompId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getPDBInsCode

public StrColumn getPDBInsCode()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.

Returns:

StrColumn

getLabelAltId

public StrColumn getLabelAltId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.label_alt.id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAtomId

public StrColumn getLabelAtomId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAsymId

public StrColumn getLabelAsymId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelCompId

public StrColumn getLabelCompId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelSeqId

public IntColumn getLabelSeqId()

Part of the identifier for the distant solvent atom. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getNeighborMacromoleculeDistance

public FloatColumn getNeighborMacromoleculeDistance()

Distance to closest neighboring macromolecule atom.

Returns:

FloatColumn

getNeighborLigandDistance

public FloatColumn getNeighborLigandDistance()

Distance to closest neighboring ligand or solvent atom.

Returns:

FloatColumn