Package org.rcsb.cif.model.generated

Class PdbxDepuiValidationStatusFlags

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxDepuiValidationStatusFlags

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxDepuiValidationStatusFlags
extends BaseCategory

Data items in the PDBX_DEPUI_VALIDATION_STATUS_FLAGS category record status details that assess the status of selected validation diagnostics.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxDepuiValidationStatusFlags(String name)
PdbxDepuiValidationStatusFlags(String name, int rowCount, Object[] encodedColumns)
PdbxDepuiValidationStatusFlags(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
IntColumn	getAdpOutliersLow()	Count of atoms with ADP (B-values) values less than 0
StrColumn	getAdpOutliersZero()	A flag to indicate if any isotropic B factors are zero.
StrColumn	getDepDatasetId()	The internal identifier assigned to each deposition.
IntColumn	getOccupancyOutliersHigh()	Count of atoms with occupancy values greater than 1
IntColumn	getOccupancyOutliersLow()	Count of atoms with occupancy values less than 0
StrColumn	getResidualBFactorsFlag()	A flag to indicate if the uploaded data is contains residual B-values
IntColumn	getSolventOutliers()	Count of solvent atoms with anonalous positions.
StrColumn	getTlsNoAniso()	A flag to indicate if the uploaded model has TLS records but no anisotropic ones.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxDepuiValidationStatusFlags

public PdbxDepuiValidationStatusFlags(String name,
                                      Map<String,Column> columns)

PdbxDepuiValidationStatusFlags

public PdbxDepuiValidationStatusFlags(String name,
                                      int rowCount,
                                      Object[] encodedColumns)

PdbxDepuiValidationStatusFlags

public PdbxDepuiValidationStatusFlags(String name)

Method Detail

getDepDatasetId

public StrColumn getDepDatasetId()

The internal identifier assigned to each deposition.

Returns:

StrColumn

getResidualBFactorsFlag

public StrColumn getResidualBFactorsFlag()

A flag to indicate if the uploaded data is contains residual B-values

Returns:

StrColumn

getOccupancyOutliersLow

public IntColumn getOccupancyOutliersLow()

Count of atoms with occupancy values less than 0

Returns:

IntColumn

getOccupancyOutliersHigh

public IntColumn getOccupancyOutliersHigh()

Count of atoms with occupancy values greater than 1

Returns:

IntColumn

getAdpOutliersLow

public IntColumn getAdpOutliersLow()

Count of atoms with ADP (B-values) values less than 0

Returns:

IntColumn

getSolventOutliers

public IntColumn getSolventOutliers()

Count of solvent atoms with anonalous positions.

Returns:

IntColumn

getTlsNoAniso

public StrColumn getTlsNoAniso()

A flag to indicate if the uploaded model has TLS records but no anisotropic ones.

Returns:

StrColumn

getAdpOutliersZero

public StrColumn getAdpOutliersZero()

A flag to indicate if any isotropic B factors are zero.

Returns:

StrColumn