java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.PdbxDccGeometry

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxDccGeometry
extends BaseCategory
```
Data items in the category record the overall deviations about geometry (such as bond length, angle, dihedral, chirality, planarity). These data are calculated with the phenix module model_vs_data.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`PdbxDccGeometry(String name)`
`PdbxDccGeometry(String name, int rowCount, Object[] encodedColumns)`
`PdbxDccGeometry(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`FloatColumn`	`getAllAtomClashscore()`	All atom score is determined by steric overlaps >0.4A per 1000 atoms.
`FloatColumn`	`getAngleLigandMax()`	The maximum root mean square deviation for bond angles (ligand only).
`FloatColumn`	`getAngleLigandRms()`	The overall root mean square deviation for bond angles (ligand only).
`FloatColumn`	`getAngleOverallMax()`	The maximum root mean square deviation for bond angles (all atoms).
`FloatColumn`	`getAngleOverallRms()`	The overall root mean square deviation for bond angles (all atoms).
`FloatColumn`	`getBondLigandMax()`	The maximum root mean square deviation for bond lengths (ligand only).
`FloatColumn`	`getBondLigandRms()`	The overall root mean square deviation for bond lengths (ligand only).
`FloatColumn`	`getBondOverallMax()`	The maximum root mean square deviation for bond lengths (all atoms).
`FloatColumn`	`getBondOverallRms()`	The overall root mean square deviation for bond lengths (all atoms).
`IntColumn`	`getCbetaDeviations()`	Number of Cbeta deviations >0.25A.
`FloatColumn`	`getChiralityOverallMax()`	The maximum root mean square deviation for chirality (all atoms).
`FloatColumn`	`getChiralityOverallRms()`	The overall root mean square deviation for chirality (all atoms).
`FloatColumn`	`getDihedralOverallMax()`	The maximum root mean square deviation for dihedrals (all atoms).
`FloatColumn`	`getDihedralOverallRms()`	The overall root mean square deviation for dihedrals (all atoms).
`FloatColumn`	`getNon_bondedRms()`	The overall on-bonded distance (all atoms).
`FloatColumn`	`getOverallScore()`	The overall score for the geometry (the smaller the better).
`StrColumn`	`getPdbid()`	The PDB id code.
`FloatColumn`	`getPlanarityOverallMax()`	The maximum root mean square deviation for planarity (all atoms).
`FloatColumn`	`getPlanarityOverallRms()`	The overall root mean square deviation for planarity (all atoms).
`IntColumn`	`getRamachandranAllowedNumber()`	Number of allowed residues in Ramachandran plot.
`FloatColumn`	`getRamachandranAllowedPercent()`	Percentage of allowed residues in Ramachandran plot.
`IntColumn`	`getRamachandranFavoredNumber()`	Number of favored residues in Ramachandran plot.
`FloatColumn`	`getRamachandranFavoredPercent()`	Percentage of favored residues in Ramachandran plot.
`IntColumn`	`getRamachandranOutlierNumber()`	Number of outliers in Ramachandran plot.
`FloatColumn`	`getRamachandranOutlierPercent()`	Percentage of outliers in Ramachandran plot.
`IntColumn`	`getRotamerOutliersNumber()`	Number of rotamer outliers.
`FloatColumn`	`getRotamerOutliersPercent()`	Percentage of rotamer outliers.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - PdbxDccGeometry
```
public PdbxDccGeometry(String name,
                       Map<String,Column> columns)
```
  - PdbxDccGeometry
```
public PdbxDccGeometry(String name,
                       int rowCount,
                       Object[] encodedColumns)
```
  - PdbxDccGeometry
```
public PdbxDccGeometry(String name)
```
- Method Detail
  - getPdbid
```
public StrColumn getPdbid()
```
    The PDB id code.
    
    Returns:
    
    StrColumn
  - getRamachandranOutlierPercent
```
public FloatColumn getRamachandranOutlierPercent()
```
    Percentage of outliers in Ramachandran plot.
    
    Returns:
    
    FloatColumn
  - getRamachandranOutlierNumber
```
public IntColumn getRamachandranOutlierNumber()
```
    Number of outliers in Ramachandran plot.
    
    Returns:
    
    IntColumn
  - getRamachandranAllowedPercent
```
public FloatColumn getRamachandranAllowedPercent()
```
    Percentage of allowed residues in Ramachandran plot.
    
    Returns:
    
    FloatColumn
  - getRamachandranAllowedNumber
```
public IntColumn getRamachandranAllowedNumber()
```
    Number of allowed residues in Ramachandran plot.
    
    Returns:
    
    IntColumn
  - getRamachandranFavoredPercent
```
public FloatColumn getRamachandranFavoredPercent()
```
    Percentage of favored residues in Ramachandran plot.
    
    Returns:
    
    FloatColumn
  - getRamachandranFavoredNumber
```
public IntColumn getRamachandranFavoredNumber()
```
    Number of favored residues in Ramachandran plot.
    
    Returns:
    
    IntColumn
  - getRotamerOutliersPercent
```
public FloatColumn getRotamerOutliersPercent()
```
    Percentage of rotamer outliers.
    
    Returns:
    
    FloatColumn
  - getRotamerOutliersNumber
```
public IntColumn getRotamerOutliersNumber()
```
    Number of rotamer outliers.
    
    Returns:
    
    IntColumn
  - getCbetaDeviations
```
public IntColumn getCbetaDeviations()
```
    Number of Cbeta deviations >0.25A.
    
    Returns:
    
    IntColumn
  - getAllAtomClashscore
```
public FloatColumn getAllAtomClashscore()
```
    All atom score is determined by steric overlaps >0.4A per 1000 atoms.
    
    Returns:
    
    FloatColumn
  - getOverallScore
```
public FloatColumn getOverallScore()
```
    The overall score for the geometry (the smaller the better).
    
    Returns:
    
    FloatColumn
  - getBondOverallRms
```
public FloatColumn getBondOverallRms()
```
    The overall root mean square deviation for bond lengths (all atoms).
    
    Returns:
    
    FloatColumn
  - getBondOverallMax
```
public FloatColumn getBondOverallMax()
```
    The maximum root mean square deviation for bond lengths (all atoms).
    
    Returns:
    
    FloatColumn
  - getBondLigandRms
```
public FloatColumn getBondLigandRms()
```
    The overall root mean square deviation for bond lengths (ligand only).
    
    Returns:
    
    FloatColumn
  - getBondLigandMax
```
public FloatColumn getBondLigandMax()
```
    The maximum root mean square deviation for bond lengths (ligand only).
    
    Returns:
    
    FloatColumn
  - getAngleOverallRms
```
public FloatColumn getAngleOverallRms()
```
    The overall root mean square deviation for bond angles (all atoms).
    
    Returns:
    
    FloatColumn
  - getAngleOverallMax
```
public FloatColumn getAngleOverallMax()
```
    The maximum root mean square deviation for bond angles (all atoms).
    
    Returns:
    
    FloatColumn
  - getAngleLigandRms
```
public FloatColumn getAngleLigandRms()
```
    The overall root mean square deviation for bond angles (ligand only).
    
    Returns:
    
    FloatColumn
  - getAngleLigandMax
```
public FloatColumn getAngleLigandMax()
```
    The maximum root mean square deviation for bond angles (ligand only).
    
    Returns:
    
    FloatColumn
  - getDihedralOverallRms
```
public FloatColumn getDihedralOverallRms()
```
    The overall root mean square deviation for dihedrals (all atoms).
    
    Returns:
    
    FloatColumn
  - getDihedralOverallMax
```
public FloatColumn getDihedralOverallMax()
```
    The maximum root mean square deviation for dihedrals (all atoms).
    
    Returns:
    
    FloatColumn
  - getChiralityOverallRms
```
public FloatColumn getChiralityOverallRms()
```
    The overall root mean square deviation for chirality (all atoms).
    
    Returns:
    
    FloatColumn
  - getChiralityOverallMax
```
public FloatColumn getChiralityOverallMax()
```
    The maximum root mean square deviation for chirality (all atoms).
    
    Returns:
    
    FloatColumn
  - getPlanarityOverallRms
```
public FloatColumn getPlanarityOverallRms()
```
    The overall root mean square deviation for planarity (all atoms).
    
    Returns:
    
    FloatColumn
  - getPlanarityOverallMax
```
public FloatColumn getPlanarityOverallMax()
```
    The maximum root mean square deviation for planarity (all atoms).
    
    Returns:
    
    FloatColumn
  - getNon_bondedRms
```
public FloatColumn getNon_bondedRms()
```
    The overall on-bonded distance (all atoms).
    
    Returns:
    
    FloatColumn

Class PdbxDccGeometry

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

PdbxDccGeometry

PdbxDccGeometry

PdbxDccGeometry

Method Detail

getPdbid

getRamachandranOutlierPercent

getRamachandranOutlierNumber

getRamachandranAllowedPercent

getRamachandranAllowedNumber

getRamachandranFavoredPercent

getRamachandranFavoredNumber

getRotamerOutliersPercent

getRotamerOutliersNumber

getCbetaDeviations

getAllAtomClashscore

getOverallScore

getBondOverallRms

getBondOverallMax

getBondLigandRms

getBondLigandMax

getAngleOverallRms

getAngleOverallMax

getAngleLigandRms

getAngleLigandMax

getDihedralOverallRms

getDihedralOverallMax

getChiralityOverallRms

getChiralityOverallMax

getPlanarityOverallRms

getPlanarityOverallMax

getNon_bondedRms