Class PdbxDatabaseStatus

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class PdbxDatabaseStatus
    extends BaseCategory
    These are internal RCSB records to keep track of data processing and status of the entry.
    • Constructor Detail

      • PdbxDatabaseStatus

        public PdbxDatabaseStatus​(String name,
                                  int rowCount,
                                  Object[] encodedColumns)
      • PdbxDatabaseStatus

        public PdbxDatabaseStatus​(String name)
    • Method Detail

      • getStatusCode

        public StrColumn getStatusCode()
        Code for status of file.
        Returns:
        StrColumn
      • getAuthorReleaseStatusCode

        public StrColumn getAuthorReleaseStatusCode()
        The release status authorized by the depositor.
        Returns:
        StrColumn
      • getStatusCodeSf

        public StrColumn getStatusCodeSf()
        Code for status of structure factor file.
        Returns:
        StrColumn
      • getStatusCodeMr

        public StrColumn getStatusCodeMr()
        Code for status of NMR constraints file.
        Returns:
        StrColumn
      • getDepReleaseCodeCoordinates

        public StrColumn getDepReleaseCodeCoordinates()
        The deposited coordinates for this deposition will be released according the value of this item.
        Returns:
        StrColumn
      • getDepReleaseCodeSequence

        public StrColumn getDepReleaseCodeSequence()
        The sequence information for this deposition will be released according the value of this item. Setting this status code to "RELEASE NOW" indicates that the macromolecular sequence(s) for this entry may be displayed in PDB status reports prior to the release of the entry. Setting this status code to "HOLD FOR RELEASE" conceals the sequence information in PDB status reports until the coordinate data for this entry are released.
        Returns:
        StrColumn
      • getDepReleaseCodeStructFact

        public StrColumn getDepReleaseCodeStructFact()
        The deposited structure factors for this deposition will be released according the value of this item.
        Returns:
        StrColumn
      • getDepReleaseCodeNmrConstraints

        public StrColumn getDepReleaseCodeNmrConstraints()
        The deposited NMR constrait data for this deposition will be released according the value of this item.
        Returns:
        StrColumn
      • getEntryId

        public StrColumn getEntryId()
        The value of _pdbx_database_status.entry_id identifies the data block.
        Returns:
        StrColumn
      • getRecvdDepositForm

        public StrColumn getRecvdDepositForm()
        This code indicates whether the deposition form for an entry has been received.
        Returns:
        StrColumn
      • getDateDepositionForm

        public StrColumn getDateDepositionForm()
        The date the deposition form is received.
        Returns:
        StrColumn
      • getDateBeginDeposition

        public StrColumn getDateBeginDeposition()
        The starting date for the deposition session.
        Returns:
        StrColumn
      • getDateBeginProcessing

        public StrColumn getDateBeginProcessing()
        The starting date for data processing.
        Returns:
        StrColumn
      • getDateEndProcessing

        public StrColumn getDateEndProcessing()
        The completion date for data processing.
        Returns:
        StrColumn
      • getDateBeginReleasePreparation

        public StrColumn getDateBeginReleasePreparation()
        The date on which release processing began.
        Returns:
        StrColumn
      • getDateAuthorReleaseRequest

        public StrColumn getDateAuthorReleaseRequest()
        The date on which the author requests entry release.
        Returns:
        StrColumn
      • getRecvdCoordinates

        public StrColumn getRecvdCoordinates()
        This code indicates whether the coordinates for an entry have been received.
        Returns:
        StrColumn
      • getDateCoordinates

        public StrColumn getDateCoordinates()
        The date the coordinates are received.
        Returns:
        StrColumn
      • getRecvdStructFact

        public StrColumn getRecvdStructFact()
        This code indicates whether the structure factors for an entry have been received.
        Returns:
        StrColumn
      • getDateStructFact

        public StrColumn getDateStructFact()
        The date the structure factors are received.
        Returns:
        StrColumn
      • getRecvdNmrConstraints

        public StrColumn getRecvdNmrConstraints()
        This code indicates whether the NMR contraint data for an entry have been received.
        Returns:
        StrColumn
      • getDateNmrConstraints

        public StrColumn getDateNmrConstraints()
        The date the structure factors are received.
        Returns:
        StrColumn
      • getRecvdInternalApproval

        public StrColumn getRecvdInternalApproval()
        This code indicates whether the internal approval for an entry have been received.
        Returns:
        StrColumn
      • getRecvdManuscript

        public StrColumn getRecvdManuscript()
        This code indicates whether the manuscript for an entry has been received.
        Returns:
        StrColumn
      • getDateManuscript

        public StrColumn getDateManuscript()
        The date the manuscript is received.
        Returns:
        StrColumn
      • getNameDepositor

        public StrColumn getNameDepositor()
        The last name of the depositor to be used in correspondance.
        Returns:
        StrColumn
      • getRecvdAuthorApproval

        public StrColumn getRecvdAuthorApproval()
        This code indicates whether the author's approval for an entry has been received.
        Returns:
        StrColumn
      • getAuthorApprovalType

        public StrColumn getAuthorApprovalType()
        This code indicates whether the author's approval for an entry was received explicitly or implicitly. The latter is automatically implied by failure to respond to the validation summary within the prescribed period.
        Returns:
        StrColumn
      • getDateAuthorApproval

        public StrColumn getDateAuthorApproval()
        The date the author's approval is received.
        Returns:
        StrColumn
      • getRecvdInitialDepositionDate

        public StrColumn getRecvdInitialDepositionDate()
        The date of initial deposition. (The first message for deposition has been received.)
        Returns:
        StrColumn
      • getDateSubmitted

        public StrColumn getDateSubmitted()
        The date of complete deposition. This corresponds to the date at which the PDB identifier is assigned.
        Returns:
        StrColumn
      • getRcsbAnnotator

        public StrColumn getRcsbAnnotator()
        The initials of the annotator processing this entry.
        Returns:
        StrColumn
      • getDateOfSfRelease

        public StrColumn getDateOfSfRelease()
        The date of PDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.
        Returns:
        StrColumn
      • getDateOfMrRelease

        public StrColumn getDateOfMrRelease()
        The date of PDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.
        Returns:
        StrColumn
      • getDateOfPDBRelease

        public StrColumn getDateOfPDBRelease()
        PDB release date. This is the date that appears in the PDB REVDAT record.
        Returns:
        StrColumn
      • getDateHoldCoordinates

        public StrColumn getDateHoldCoordinates()
        At an author's request, a coordinate entry may be held after processing for some period of time.
        Returns:
        StrColumn
      • getDateHoldStructFact

        public StrColumn getDateHoldStructFact()
        At an author's request, the structure factors may be held after processing for some period of time.
        Returns:
        StrColumn
      • getDateHoldNmrConstraints

        public StrColumn getDateHoldNmrConstraints()
        At an author's request, the NMR constraint data may be held after processing for some period of time.
        Returns:
        StrColumn
      • getHoldForPublication

        public StrColumn getHoldForPublication()
        At an author's request, an entry is to be held until publication.
        Returns:
        StrColumn
      • getSGEntry

        public StrColumn getSGEntry()
        This code indicates whether the entry belongs to Structural Genomics Project.
        Returns:
        StrColumn
      • getPdbDateOfAuthorApproval

        public StrColumn getPdbDateOfAuthorApproval()
        This is the date when PDB received the author's approval for an entry which has been processed by NDB. (This is a place holder for entries processed before Jan. 1, 1996.)
        Returns:
        StrColumn
      • getDepositSite

        public StrColumn getDepositSite()
        The site where the file was deposited.
        Returns:
        StrColumn
      • getProcessSite

        public StrColumn getProcessSite()
        The site where the file was deposited.
        Returns:
        StrColumn
      • getDepReleaseCodeChemicalShifts

        public StrColumn getDepReleaseCodeChemicalShifts()
        The deposited chemical shift data for this deposition will be released according the value of this item.
        Returns:
        StrColumn
      • getRecvdChemicalShifts

        public StrColumn getRecvdChemicalShifts()
        This code indicates whether the chemical shift data for an entry have been received.
        Returns:
        StrColumn
      • getDateChemicalShifts

        public StrColumn getDateChemicalShifts()
        The date the chemical shift data are received.
        Returns:
        StrColumn
      • getDateHoldChemicalShifts

        public StrColumn getDateHoldChemicalShifts()
        At an author's request, the chemical shift data may be held after processing for some period of time.
        Returns:
        StrColumn
      • getStatusCodeCs

        public StrColumn getStatusCodeCs()
        Code for status of chemical shift data file.
        Returns:
        StrColumn
      • getDateOfCsRelease

        public StrColumn getDateOfCsRelease()
        The date of PDB release. This corresponds to the date at which the chemical shift data is placed into the public archive.
        Returns:
        StrColumn
      • getMethodsDevelopmentCategory

        public StrColumn getMethodsDevelopmentCategory()
        The methods development category in which this entry has been placed.
        Returns:
        StrColumn
      • getPdbFormatCompatible

        public StrColumn getPdbFormatCompatible()
        A flag indicating that the entry is compatible with the PDB format. A value of 'N' indicates that the no PDB format data file is corresponding to this entry is available in the PDB archive.
        Returns:
        StrColumn
      • getAuthReqRelDate

        public StrColumn getAuthReqRelDate()
        The release date requested by the depositor. This is used when the depositor has provided the release hold date expiration or a one year hold interval.
        Returns:
        StrColumn
      • getNdbTid

        public StrColumn getNdbTid()
        Temporary NDB ID.
        Returns:
        StrColumn
      • getStatusCoordinatesInNDB

        public StrColumn getStatusCoordinatesInNDB()
        Give information about status of coordinates of an entry in NDB.
        Returns:
        StrColumn
      • getDateRevised

        public StrColumn getDateRevised()
        The date of a revision. This corresponds to the date at which the entry was updated and a revision entry created.
        Returns:
        StrColumn
      • getReplacedEntryId

        public StrColumn getReplacedEntryId()
        The NDB ID that this entry replaced.
        Returns:
        StrColumn
      • getRevisionId

        public StrColumn getRevisionId()
        The NDB ID for entry that replaces this entry.
        Returns:
        StrColumn
      • getRevisionDescription

        public StrColumn getRevisionDescription()
        A description of the revision to this entry.
        Returns:
        StrColumn
      • getPdbxAnnotator

        public StrColumn getPdbxAnnotator()
        The initials of the annotator processing this entry.
        Returns:
        StrColumn
      • getDateOfNDBRelease

        public StrColumn getDateOfNDBRelease()
        The date of NDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.
        Returns:
        StrColumn
      • getDateReleasedToPDB

        public StrColumn getDateReleasedToPDB()
        The date on which the entry is sent to PDB.
        Returns:
        StrColumn
      • getSkipPDBREMARK500

        public StrColumn getSkipPDBREMARK500()
        This code indicates whether to skip production of PDB REMARK 500 for this file.
        Returns:
        StrColumn
      • getSkipPDBREMARK

        public StrColumn getSkipPDBREMARK()
        This code indicates whether to skip production of a PDB REMARK for this file.
        Returns:
        StrColumn
      • getTitleSuppression

        public StrColumn getTitleSuppression()
        This code indicates whether to suppress the entry title.
        Returns:
        StrColumn