Package org.rcsb.cif.model.generated
Class PdbxDatabaseStatus
- java.lang.Object
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- org.rcsb.cif.model.BaseCategory
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- org.rcsb.cif.model.generated.PdbxDatabaseStatus
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- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class PdbxDatabaseStatus extends BaseCategory
These are internal RCSB records to keep track of data processing and status of the entry.
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Field Summary
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Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
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Constructor Summary
Constructors Constructor Description PdbxDatabaseStatus(String name)PdbxDatabaseStatus(String name, int rowCount, Object[] encodedColumns)PdbxDatabaseStatus(String name, Map<String,Column> columns)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description StrColumngetAuthorApprovalType()This code indicates whether the author's approval for an entry was received explicitly or implicitly.StrColumngetAuthorReleaseStatusCode()The release status authorized by the depositor.StrColumngetAuthReqRelDate()The release date requested by the depositor.StrColumngetDateAuthorApproval()The date the author's approval is received.StrColumngetDateAuthorReleaseRequest()The date on which the author requests entry release.StrColumngetDateBeginDeposition()The starting date for the deposition session.StrColumngetDateBeginProcessing()The starting date for data processing.StrColumngetDateBeginReleasePreparation()The date on which release processing began.StrColumngetDateChemicalShifts()The date the chemical shift data are received.StrColumngetDateCoordinates()The date the coordinates are received.StrColumngetDateDepositionForm()The date the deposition form is received.StrColumngetDateEndProcessing()The completion date for data processing.StrColumngetDateHoldChemicalShifts()At an author's request, the chemical shift data may be held after processing for some period of time.StrColumngetDateHoldCoordinates()At an author's request, a coordinate entry may be held after processing for some period of time.StrColumngetDateHoldNmrConstraints()At an author's request, the NMR constraint data may be held after processing for some period of time.StrColumngetDateHoldStructFact()At an author's request, the structure factors may be held after processing for some period of time.StrColumngetDateManuscript()The date the manuscript is received.StrColumngetDateNmrConstraints()The date the structure factors are received.StrColumngetDateOfCsRelease()The date of PDB release.StrColumngetDateOfMrRelease()The date of PDB/RCSB release.StrColumngetDateOfNDBRelease()The date of NDB/RCSB release.StrColumngetDateOfPDBRelease()PDB release date.StrColumngetDateOfSfRelease()The date of PDB/RCSB release.StrColumngetDateReleasedToPDB()The date on which the entry is sent to PDB.StrColumngetDateRevised()The date of a revision.StrColumngetDateStructFact()The date the structure factors are received.StrColumngetDateSubmitted()The date of complete deposition.StrColumngetDepositSite()The site where the file was deposited.StrColumngetDepReleaseCodeChemicalShifts()The deposited chemical shift data for this deposition will be released according the value of this item.StrColumngetDepReleaseCodeCoordinates()The deposited coordinates for this deposition will be released according the value of this item.StrColumngetDepReleaseCodeNmrConstraints()The deposited NMR constrait data for this deposition will be released according the value of this item.StrColumngetDepReleaseCodeSequence()The sequence information for this deposition will be released according the value of this item.StrColumngetDepReleaseCodeStructFact()The deposited structure factors for this deposition will be released according the value of this item.StrColumngetEntryId()The value of _pdbx_database_status.entry_id identifies the data block.StrColumngetHoldForPublication()At an author's request, an entry is to be held until publication.StrColumngetMethodsDevelopmentCategory()The methods development category in which this entry has been placed.StrColumngetNameDepositor()The last name of the depositor to be used in correspondance.StrColumngetNdbTid()Temporary NDB ID.StrColumngetPdbDateOfAuthorApproval()This is the date when PDB received the author's approval for an entry which has been processed by NDB.StrColumngetPdbFormatCompatible()A flag indicating that the entry is compatible with the PDB format.StrColumngetPdbxAnnotator()The initials of the annotator processing this entry.StrColumngetProcessSite()The site where the file was deposited.StrColumngetRcsbAnnotator()The initials of the annotator processing this entry.StrColumngetRecvdAuthorApproval()This code indicates whether the author's approval for an entry has been received.StrColumngetRecvdChemicalShifts()This code indicates whether the chemical shift data for an entry have been received.StrColumngetRecvdCoordinates()This code indicates whether the coordinates for an entry have been received.StrColumngetRecvdDepositForm()This code indicates whether the deposition form for an entry has been received.StrColumngetRecvdInitialDepositionDate()The date of initial deposition.StrColumngetRecvdInternalApproval()This code indicates whether the internal approval for an entry have been received.StrColumngetRecvdManuscript()This code indicates whether the manuscript for an entry has been received.StrColumngetRecvdNmrConstraints()This code indicates whether the NMR contraint data for an entry have been received.StrColumngetRecvdStructFact()This code indicates whether the structure factors for an entry have been received.StrColumngetReplacedEntryId()The NDB ID that this entry replaced.StrColumngetRevisionDescription()A description of the revision to this entry.StrColumngetRevisionId()The NDB ID for entry that replaces this entry.StrColumngetSGEntry()This code indicates whether the entry belongs to Structural Genomics Project.StrColumngetSkipPDBREMARK()This code indicates whether to skip production of a PDB REMARK for this file.StrColumngetSkipPDBREMARK500()This code indicates whether to skip production of PDB REMARK 500 for this file.StrColumngetStatusCode()Code for status of file.StrColumngetStatusCodeCs()Code for status of chemical shift data file.StrColumngetStatusCodeMr()Code for status of NMR constraints file.StrColumngetStatusCodeSf()Code for status of structure factor file.StrColumngetStatusCoordinatesInNDB()Give information about status of coordinates of an entry in NDB.StrColumngetTitleSuppression()This code indicates whether to suppress the entry title.-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
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Method Detail
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getStatusCode
public StrColumn getStatusCode()
Code for status of file.- Returns:
- StrColumn
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getAuthorReleaseStatusCode
public StrColumn getAuthorReleaseStatusCode()
The release status authorized by the depositor.- Returns:
- StrColumn
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getStatusCodeSf
public StrColumn getStatusCodeSf()
Code for status of structure factor file.- Returns:
- StrColumn
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getStatusCodeMr
public StrColumn getStatusCodeMr()
Code for status of NMR constraints file.- Returns:
- StrColumn
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getDepReleaseCodeCoordinates
public StrColumn getDepReleaseCodeCoordinates()
The deposited coordinates for this deposition will be released according the value of this item.- Returns:
- StrColumn
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getDepReleaseCodeSequence
public StrColumn getDepReleaseCodeSequence()
The sequence information for this deposition will be released according the value of this item. Setting this status code to "RELEASE NOW" indicates that the macromolecular sequence(s) for this entry may be displayed in PDB status reports prior to the release of the entry. Setting this status code to "HOLD FOR RELEASE" conceals the sequence information in PDB status reports until the coordinate data for this entry are released.- Returns:
- StrColumn
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getDepReleaseCodeStructFact
public StrColumn getDepReleaseCodeStructFact()
The deposited structure factors for this deposition will be released according the value of this item.- Returns:
- StrColumn
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getDepReleaseCodeNmrConstraints
public StrColumn getDepReleaseCodeNmrConstraints()
The deposited NMR constrait data for this deposition will be released according the value of this item.- Returns:
- StrColumn
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getEntryId
public StrColumn getEntryId()
The value of _pdbx_database_status.entry_id identifies the data block.- Returns:
- StrColumn
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getRecvdDepositForm
public StrColumn getRecvdDepositForm()
This code indicates whether the deposition form for an entry has been received.- Returns:
- StrColumn
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getDateDepositionForm
public StrColumn getDateDepositionForm()
The date the deposition form is received.- Returns:
- StrColumn
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getDateBeginDeposition
public StrColumn getDateBeginDeposition()
The starting date for the deposition session.- Returns:
- StrColumn
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getDateBeginProcessing
public StrColumn getDateBeginProcessing()
The starting date for data processing.- Returns:
- StrColumn
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getDateEndProcessing
public StrColumn getDateEndProcessing()
The completion date for data processing.- Returns:
- StrColumn
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getDateBeginReleasePreparation
public StrColumn getDateBeginReleasePreparation()
The date on which release processing began.- Returns:
- StrColumn
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getDateAuthorReleaseRequest
public StrColumn getDateAuthorReleaseRequest()
The date on which the author requests entry release.- Returns:
- StrColumn
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getRecvdCoordinates
public StrColumn getRecvdCoordinates()
This code indicates whether the coordinates for an entry have been received.- Returns:
- StrColumn
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getDateCoordinates
public StrColumn getDateCoordinates()
The date the coordinates are received.- Returns:
- StrColumn
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getRecvdStructFact
public StrColumn getRecvdStructFact()
This code indicates whether the structure factors for an entry have been received.- Returns:
- StrColumn
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getDateStructFact
public StrColumn getDateStructFact()
The date the structure factors are received.- Returns:
- StrColumn
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getRecvdNmrConstraints
public StrColumn getRecvdNmrConstraints()
This code indicates whether the NMR contraint data for an entry have been received.- Returns:
- StrColumn
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getDateNmrConstraints
public StrColumn getDateNmrConstraints()
The date the structure factors are received.- Returns:
- StrColumn
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getRecvdInternalApproval
public StrColumn getRecvdInternalApproval()
This code indicates whether the internal approval for an entry have been received.- Returns:
- StrColumn
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getRecvdManuscript
public StrColumn getRecvdManuscript()
This code indicates whether the manuscript for an entry has been received.- Returns:
- StrColumn
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getDateManuscript
public StrColumn getDateManuscript()
The date the manuscript is received.- Returns:
- StrColumn
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getNameDepositor
public StrColumn getNameDepositor()
The last name of the depositor to be used in correspondance.- Returns:
- StrColumn
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getRecvdAuthorApproval
public StrColumn getRecvdAuthorApproval()
This code indicates whether the author's approval for an entry has been received.- Returns:
- StrColumn
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getAuthorApprovalType
public StrColumn getAuthorApprovalType()
This code indicates whether the author's approval for an entry was received explicitly or implicitly. The latter is automatically implied by failure to respond to the validation summary within the prescribed period.- Returns:
- StrColumn
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getDateAuthorApproval
public StrColumn getDateAuthorApproval()
The date the author's approval is received.- Returns:
- StrColumn
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getRecvdInitialDepositionDate
public StrColumn getRecvdInitialDepositionDate()
The date of initial deposition. (The first message for deposition has been received.)- Returns:
- StrColumn
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getDateSubmitted
public StrColumn getDateSubmitted()
The date of complete deposition. This corresponds to the date at which the PDB identifier is assigned.- Returns:
- StrColumn
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getRcsbAnnotator
public StrColumn getRcsbAnnotator()
The initials of the annotator processing this entry.- Returns:
- StrColumn
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getDateOfSfRelease
public StrColumn getDateOfSfRelease()
The date of PDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.- Returns:
- StrColumn
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getDateOfMrRelease
public StrColumn getDateOfMrRelease()
The date of PDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.- Returns:
- StrColumn
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getDateOfPDBRelease
public StrColumn getDateOfPDBRelease()
PDB release date. This is the date that appears in the PDB REVDAT record.- Returns:
- StrColumn
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getDateHoldCoordinates
public StrColumn getDateHoldCoordinates()
At an author's request, a coordinate entry may be held after processing for some period of time.- Returns:
- StrColumn
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getDateHoldStructFact
public StrColumn getDateHoldStructFact()
At an author's request, the structure factors may be held after processing for some period of time.- Returns:
- StrColumn
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getDateHoldNmrConstraints
public StrColumn getDateHoldNmrConstraints()
At an author's request, the NMR constraint data may be held after processing for some period of time.- Returns:
- StrColumn
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getHoldForPublication
public StrColumn getHoldForPublication()
At an author's request, an entry is to be held until publication.- Returns:
- StrColumn
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getSGEntry
public StrColumn getSGEntry()
This code indicates whether the entry belongs to Structural Genomics Project.- Returns:
- StrColumn
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getPdbDateOfAuthorApproval
public StrColumn getPdbDateOfAuthorApproval()
This is the date when PDB received the author's approval for an entry which has been processed by NDB. (This is a place holder for entries processed before Jan. 1, 1996.)- Returns:
- StrColumn
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getDepositSite
public StrColumn getDepositSite()
The site where the file was deposited.- Returns:
- StrColumn
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getProcessSite
public StrColumn getProcessSite()
The site where the file was deposited.- Returns:
- StrColumn
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getDepReleaseCodeChemicalShifts
public StrColumn getDepReleaseCodeChemicalShifts()
The deposited chemical shift data for this deposition will be released according the value of this item.- Returns:
- StrColumn
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getRecvdChemicalShifts
public StrColumn getRecvdChemicalShifts()
This code indicates whether the chemical shift data for an entry have been received.- Returns:
- StrColumn
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getDateChemicalShifts
public StrColumn getDateChemicalShifts()
The date the chemical shift data are received.- Returns:
- StrColumn
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getDateHoldChemicalShifts
public StrColumn getDateHoldChemicalShifts()
At an author's request, the chemical shift data may be held after processing for some period of time.- Returns:
- StrColumn
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getStatusCodeCs
public StrColumn getStatusCodeCs()
Code for status of chemical shift data file.- Returns:
- StrColumn
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getDateOfCsRelease
public StrColumn getDateOfCsRelease()
The date of PDB release. This corresponds to the date at which the chemical shift data is placed into the public archive.- Returns:
- StrColumn
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getMethodsDevelopmentCategory
public StrColumn getMethodsDevelopmentCategory()
The methods development category in which this entry has been placed.- Returns:
- StrColumn
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getPdbFormatCompatible
public StrColumn getPdbFormatCompatible()
A flag indicating that the entry is compatible with the PDB format. A value of 'N' indicates that the no PDB format data file is corresponding to this entry is available in the PDB archive.- Returns:
- StrColumn
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getAuthReqRelDate
public StrColumn getAuthReqRelDate()
The release date requested by the depositor. This is used when the depositor has provided the release hold date expiration or a one year hold interval.- Returns:
- StrColumn
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getNdbTid
public StrColumn getNdbTid()
Temporary NDB ID.- Returns:
- StrColumn
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getStatusCoordinatesInNDB
public StrColumn getStatusCoordinatesInNDB()
Give information about status of coordinates of an entry in NDB.- Returns:
- StrColumn
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getDateRevised
public StrColumn getDateRevised()
The date of a revision. This corresponds to the date at which the entry was updated and a revision entry created.- Returns:
- StrColumn
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getReplacedEntryId
public StrColumn getReplacedEntryId()
The NDB ID that this entry replaced.- Returns:
- StrColumn
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getRevisionId
public StrColumn getRevisionId()
The NDB ID for entry that replaces this entry.- Returns:
- StrColumn
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getRevisionDescription
public StrColumn getRevisionDescription()
A description of the revision to this entry.- Returns:
- StrColumn
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getPdbxAnnotator
public StrColumn getPdbxAnnotator()
The initials of the annotator processing this entry.- Returns:
- StrColumn
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getDateOfNDBRelease
public StrColumn getDateOfNDBRelease()
The date of NDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.- Returns:
- StrColumn
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getDateReleasedToPDB
public StrColumn getDateReleasedToPDB()
The date on which the entry is sent to PDB.- Returns:
- StrColumn
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getSkipPDBREMARK500
public StrColumn getSkipPDBREMARK500()
This code indicates whether to skip production of PDB REMARK 500 for this file.- Returns:
- StrColumn
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getSkipPDBREMARK
public StrColumn getSkipPDBREMARK()
This code indicates whether to skip production of a PDB REMARK for this file.- Returns:
- StrColumn
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getTitleSuppression
public StrColumn getTitleSuppression()
This code indicates whether to suppress the entry title.- Returns:
- StrColumn
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