Package org.rcsb.cif.model.generated
Class PdbxCrystalAlignment
- java.lang.Object
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- org.rcsb.cif.model.BaseCategory
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- org.rcsb.cif.model.generated.PdbxCrystalAlignment
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- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class PdbxCrystalAlignment extends BaseCategory
Data in the PDBX_CRYSTAL_ALIGNMENT are produced by log files from programs during indexing
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Field Summary
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Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
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Constructor Summary
Constructors Constructor Description PdbxCrystalAlignment(String name)PdbxCrystalAlignment(String name, int rowCount, Object[] encodedColumns)PdbxCrystalAlignment(String name, Map<String,Column> columns)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description FloatColumngetCrossfireX()Angular spread (in degrees) of incident X-ray along the horizontal (x) direction.FloatColumngetCrossfireXEsd()The estimated deviation of angular spread (in degrees) of incident X-ray along the horizontal (x) direction.FloatColumngetCrossfireXy()Correlated xy component of the beam spread.FloatColumngetCrossfireXyEsd()The estimated deviation of correlated xy component of the beam spread (in degrees^2).FloatColumngetCrossfireY()Angular spread (in degrees) of incident X-ray along the vertical (y) direction.FloatColumngetCrossfireYEsd()The estimated deviation of angular spread (in degrees) of incident X-ray along the vertical (y) direction.StrColumngetCrystalId()The identifer of the crystal.FloatColumngetCrystalToDetectorDistance()Distance (mm) from crystal to detector.FloatColumngetCrystalToDetectorDistanceEsd()The estimated deviation of distance (mm) from crystal to detector.FloatColumngetCrysxSpindle()Crystal mis-orientation angle (in degree) on x axis (spindle).FloatColumngetCrysxSpindleEsd()The estimated deviation of orientation angle (in degree) on x axis.FloatColumngetCrysyVertical()Crystal mis-orientation angle (in degree) on y axis (vertical).FloatColumngetCrysyVerticalEsd()The estimated deviation of orientation angle (in degree) on y axis.FloatColumngetCryszBeam()Crystal mis-orientation angle (in degree) on z axis (in beam).FloatColumngetCryszBeamEsd()The estimated deviation of orientation angle (in degree) on yzaxis.FloatColumngetOscillationEnd()Ending oscillation angle (in degrees) (default end = start + range).FloatColumngetOscillationRange()The actual oscillation angle (normally <1.0 degree).FloatColumngetOscillationStart()Starting oscillation angle (in degrees) .FloatColumngetXbeam()Distance (mm) from the edge of data to beam spot (in X direction).FloatColumngetXbeamEsd()The estimated deviation of xbeam (mm).FloatColumngetYbeam()Distance from (mm) the edge of data to beam spot (in Y direction).FloatColumngetYbeamEsd()The estimated deviation of ybeam (mm).-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
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Method Detail
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getCrystalId
public StrColumn getCrystalId()
The identifer of the crystal.- Returns:
- StrColumn
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getOscillationRange
public FloatColumn getOscillationRange()
The actual oscillation angle (normally <1.0 degree).- Returns:
- FloatColumn
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getOscillationStart
public FloatColumn getOscillationStart()
Starting oscillation angle (in degrees) .- Returns:
- FloatColumn
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getOscillationEnd
public FloatColumn getOscillationEnd()
Ending oscillation angle (in degrees) (default end = start + range).- Returns:
- FloatColumn
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getXbeam
public FloatColumn getXbeam()
Distance (mm) from the edge of data to beam spot (in X direction).- Returns:
- FloatColumn
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getXbeamEsd
public FloatColumn getXbeamEsd()
The estimated deviation of xbeam (mm).- Returns:
- FloatColumn
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getYbeam
public FloatColumn getYbeam()
Distance from (mm) the edge of data to beam spot (in Y direction).- Returns:
- FloatColumn
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getYbeamEsd
public FloatColumn getYbeamEsd()
The estimated deviation of ybeam (mm).- Returns:
- FloatColumn
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getCrysxSpindle
public FloatColumn getCrysxSpindle()
Crystal mis-orientation angle (in degree) on x axis (spindle).- Returns:
- FloatColumn
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getCrysxSpindleEsd
public FloatColumn getCrysxSpindleEsd()
The estimated deviation of orientation angle (in degree) on x axis.- Returns:
- FloatColumn
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getCrysyVertical
public FloatColumn getCrysyVertical()
Crystal mis-orientation angle (in degree) on y axis (vertical).- Returns:
- FloatColumn
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getCrysyVerticalEsd
public FloatColumn getCrysyVerticalEsd()
The estimated deviation of orientation angle (in degree) on y axis.- Returns:
- FloatColumn
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getCryszBeam
public FloatColumn getCryszBeam()
Crystal mis-orientation angle (in degree) on z axis (in beam).- Returns:
- FloatColumn
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getCryszBeamEsd
public FloatColumn getCryszBeamEsd()
The estimated deviation of orientation angle (in degree) on yzaxis.- Returns:
- FloatColumn
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getCrystalToDetectorDistance
public FloatColumn getCrystalToDetectorDistance()
Distance (mm) from crystal to detector.- Returns:
- FloatColumn
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getCrystalToDetectorDistanceEsd
public FloatColumn getCrystalToDetectorDistanceEsd()
The estimated deviation of distance (mm) from crystal to detector.- Returns:
- FloatColumn
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getCrossfireX
public FloatColumn getCrossfireX()
Angular spread (in degrees) of incident X-ray along the horizontal (x) direction. Default is 0.- Returns:
- FloatColumn
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getCrossfireXEsd
public FloatColumn getCrossfireXEsd()
The estimated deviation of angular spread (in degrees) of incident X-ray along the horizontal (x) direction.- Returns:
- FloatColumn
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getCrossfireY
public FloatColumn getCrossfireY()
Angular spread (in degrees) of incident X-ray along the vertical (y) direction. Default is 0.- Returns:
- FloatColumn
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getCrossfireYEsd
public FloatColumn getCrossfireYEsd()
The estimated deviation of angular spread (in degrees) of incident X-ray along the vertical (y) direction.- Returns:
- FloatColumn
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getCrossfireXy
public FloatColumn getCrossfireXy()
Correlated xy component of the beam spread. This tends to be zero within error (in degrees^2).- Returns:
- FloatColumn
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getCrossfireXyEsd
public FloatColumn getCrossfireXyEsd()
The estimated deviation of correlated xy component of the beam spread (in degrees^2).- Returns:
- FloatColumn
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