Class PdbxCrystalAlignment

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class PdbxCrystalAlignment
    extends BaseCategory
    Data in the PDBX_CRYSTAL_ALIGNMENT are produced by log files from programs during indexing
    • Constructor Detail

      • PdbxCrystalAlignment

        public PdbxCrystalAlignment​(String name,
                                    int rowCount,
                                    Object[] encodedColumns)
      • PdbxCrystalAlignment

        public PdbxCrystalAlignment​(String name)
    • Method Detail

      • getCrystalId

        public StrColumn getCrystalId()
        The identifer of the crystal.
        Returns:
        StrColumn
      • getOscillationRange

        public FloatColumn getOscillationRange()
        The actual oscillation angle (normally <1.0 degree).
        Returns:
        FloatColumn
      • getOscillationStart

        public FloatColumn getOscillationStart()
        Starting oscillation angle (in degrees) .
        Returns:
        FloatColumn
      • getOscillationEnd

        public FloatColumn getOscillationEnd()
        Ending oscillation angle (in degrees) (default end = start + range).
        Returns:
        FloatColumn
      • getXbeam

        public FloatColumn getXbeam()
        Distance (mm) from the edge of data to beam spot (in X direction).
        Returns:
        FloatColumn
      • getXbeamEsd

        public FloatColumn getXbeamEsd()
        The estimated deviation of xbeam (mm).
        Returns:
        FloatColumn
      • getYbeam

        public FloatColumn getYbeam()
        Distance from (mm) the edge of data to beam spot (in Y direction).
        Returns:
        FloatColumn
      • getYbeamEsd

        public FloatColumn getYbeamEsd()
        The estimated deviation of ybeam (mm).
        Returns:
        FloatColumn
      • getCrysxSpindle

        public FloatColumn getCrysxSpindle()
        Crystal mis-orientation angle (in degree) on x axis (spindle).
        Returns:
        FloatColumn
      • getCrysxSpindleEsd

        public FloatColumn getCrysxSpindleEsd()
        The estimated deviation of orientation angle (in degree) on x axis.
        Returns:
        FloatColumn
      • getCrysyVertical

        public FloatColumn getCrysyVertical()
        Crystal mis-orientation angle (in degree) on y axis (vertical).
        Returns:
        FloatColumn
      • getCrysyVerticalEsd

        public FloatColumn getCrysyVerticalEsd()
        The estimated deviation of orientation angle (in degree) on y axis.
        Returns:
        FloatColumn
      • getCryszBeam

        public FloatColumn getCryszBeam()
        Crystal mis-orientation angle (in degree) on z axis (in beam).
        Returns:
        FloatColumn
      • getCryszBeamEsd

        public FloatColumn getCryszBeamEsd()
        The estimated deviation of orientation angle (in degree) on yzaxis.
        Returns:
        FloatColumn
      • getCrystalToDetectorDistance

        public FloatColumn getCrystalToDetectorDistance()
        Distance (mm) from crystal to detector.
        Returns:
        FloatColumn
      • getCrystalToDetectorDistanceEsd

        public FloatColumn getCrystalToDetectorDistanceEsd()
        The estimated deviation of distance (mm) from crystal to detector.
        Returns:
        FloatColumn
      • getCrossfireX

        public FloatColumn getCrossfireX()
        Angular spread (in degrees) of incident X-ray along the horizontal (x) direction. Default is 0.
        Returns:
        FloatColumn
      • getCrossfireXEsd

        public FloatColumn getCrossfireXEsd()
        The estimated deviation of angular spread (in degrees) of incident X-ray along the horizontal (x) direction.
        Returns:
        FloatColumn
      • getCrossfireY

        public FloatColumn getCrossfireY()
        Angular spread (in degrees) of incident X-ray along the vertical (y) direction. Default is 0.
        Returns:
        FloatColumn
      • getCrossfireYEsd

        public FloatColumn getCrossfireYEsd()
        The estimated deviation of angular spread (in degrees) of incident X-ray along the vertical (y) direction.
        Returns:
        FloatColumn
      • getCrossfireXy

        public FloatColumn getCrossfireXy()
        Correlated xy component of the beam spread. This tends to be zero within error (in degrees^2).
        Returns:
        FloatColumn
      • getCrossfireXyEsd

        public FloatColumn getCrossfireXyEsd()
        The estimated deviation of correlated xy component of the beam spread (in degrees^2).
        Returns:
        FloatColumn