Package org.rcsb.cif.model.generated

Class PdbxConnectAtom

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxConnectAtom

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxConnectAtom
extends BaseCategory

Local data items describing ligand and monomer atom names and connectivity.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxConnectAtom(String name)
PdbxConnectAtom(String name, int rowCount, Object[] encodedColumns)
PdbxConnectAtom(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
IntColumn	getAlignPos()	Starting column of atom name in PDB atom field.
StrColumn	getAtomName()	Uniquely identifies the atom within the component.
StrColumn	getBondType()	Bond type.
IntColumn	getCharge()	Charge
StrColumn	getConnectTo()	Identifies a connected atom within the component.
StrColumn	getResName()	Unique (typically 3-letter code) identifier for chemical group.
StrColumn	getTypeSymbol()	Element symbol

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxConnectAtom

public PdbxConnectAtom(String name,
                       Map<String,Column> columns)

PdbxConnectAtom

public PdbxConnectAtom(String name,
                       int rowCount,
                       Object[] encodedColumns)

PdbxConnectAtom

public PdbxConnectAtom(String name)

Method Detail

getResName

public StrColumn getResName()

Unique (typically 3-letter code) identifier for chemical group.

Returns:

StrColumn

getAtomName

public StrColumn getAtomName()

Uniquely identifies the atom within the component.

Returns:

StrColumn

getConnectTo

public StrColumn getConnectTo()

Identifies a connected atom within the component.

Returns:

StrColumn

getTypeSymbol

public StrColumn getTypeSymbol()

Element symbol

Returns:

StrColumn

getCharge

public IntColumn getCharge()

Charge

Returns:

IntColumn

getBondType

public StrColumn getBondType()

Bond type.

Returns:

StrColumn

getAlignPos

public IntColumn getAlignPos()

Starting column of atom name in PDB atom field.

Returns:

IntColumn