Package org.rcsb.cif.model.generated

Class PdbxChemCompModelBond

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxChemCompModelBond

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxChemCompModelBond
extends BaseCategory

Data items in the PDBX_CHEM_COMP_MODEL_BOND category record details about the bonds between atoms in a chemical component model instance.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxChemCompModelBond(String name)
PdbxChemCompModelBond(String name, int rowCount, Object[] encodedColumns)
PdbxChemCompModelBond(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAtomId1()	The ID of the first of the two atoms that define the bond.
StrColumn	getAtomId2()	The ID of the second of the two atoms that define the bond.
StrColumn	getModelId()	This data item is a pointer to _pdbx_chem_comp_model.id in the PDBX_CHEM_COMP_MODEL category.
IntColumn	getOrdinalId()	The value of _pdbx_chem_comp_model_bond.ordinal_id is an ordinal identifer for each atom in the PDBX_CHEM_COMP_MODEL_BOND list.
StrColumn	getValueOrder()	The value that should be taken as the target for the chemical bond associated with the specified atoms, expressed as a bond order.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxChemCompModelBond

public PdbxChemCompModelBond(String name,
                             Map<String,Column> columns)

PdbxChemCompModelBond

public PdbxChemCompModelBond(String name,
                             int rowCount,
                             Object[] encodedColumns)

PdbxChemCompModelBond

public PdbxChemCompModelBond(String name)

Method Detail

getAtomId1

public StrColumn getAtomId1()

The ID of the first of the two atoms that define the bond. This data item is a pointer to _pdbx_chem_comp_model_atom.atom_id in the PDBX_CHEM_COMP_MODEL_ATOM category.

Returns:

StrColumn

getAtomId2

public StrColumn getAtomId2()

The ID of the second of the two atoms that define the bond. This data item is a pointer to _pdbx_chem_comp_model_atom.atom_id in the PDBX_CHEM_COMP_MODEL_ATOM category.

Returns:

StrColumn

getModelId

public StrColumn getModelId()

This data item is a pointer to _pdbx_chem_comp_model.id in the PDBX_CHEM_COMP_MODEL category.

Returns:

StrColumn

getValueOrder

public StrColumn getValueOrder()

The value that should be taken as the target for the chemical bond associated with the specified atoms, expressed as a bond order.

Returns:

StrColumn

getOrdinalId

public IntColumn getOrdinalId()

The value of _pdbx_chem_comp_model_bond.ordinal_id is an ordinal identifer for each atom in the PDBX_CHEM_COMP_MODEL_BOND list.

Returns:

IntColumn