Package org.rcsb.cif.model.generated

Class PdbxChemCompModelAtom

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxChemCompModelAtom

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxChemCompModelAtom
extends BaseCategory

Data items in the PDBX_CHEM_COMP_MODEL_ATOM category record coordinates for the chemical component model instance.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxChemCompModelAtom(String name)
PdbxChemCompModelAtom(String name, int rowCount, Object[] encodedColumns)
PdbxChemCompModelAtom(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAtomId()	The value of _pdbx_chem_comp_model_atom.atom_id uniquely identifies each atom in the PDBX_CHEM_COMP_MODEL_ATOM list.
IntColumn	getCharge()	The net integer charge assigned to this atom.
FloatColumn	getModelCartnX()	The x component of the coordinates for this atom in this component model specified as orthogonal angstroms.
FloatColumn	getModelCartnY()	The y component of the coordinates for this atom in this component model specified as orthogonal angstroms.
FloatColumn	getModelCartnZ()	The z component of the coordinates for this atom in this component model specified as orthogonal angstroms.
StrColumn	getModelId()	This data item is a pointer to _pdbx_chem_comp_model.id in the PDBX_CHEM_COMP_MODEL category.
IntColumn	getOrdinalId()	The value of _pdbx_chem_comp_model_atom.ordinal_id is an ordinal identifer for each atom in the PDBX_CHEM_COMP_MODEL_ATOM list.
StrColumn	getTypeSymbol()	The code used to identify the atom species representing this atom type.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxChemCompModelAtom

public PdbxChemCompModelAtom(String name,
                             Map<String,Column> columns)

PdbxChemCompModelAtom

public PdbxChemCompModelAtom(String name,
                             int rowCount,
                             Object[] encodedColumns)

PdbxChemCompModelAtom

public PdbxChemCompModelAtom(String name)

Method Detail

getAtomId

public StrColumn getAtomId()

The value of _pdbx_chem_comp_model_atom.atom_id uniquely identifies each atom in the PDBX_CHEM_COMP_MODEL_ATOM list.

Returns:

StrColumn

getOrdinalId

public IntColumn getOrdinalId()

The value of _pdbx_chem_comp_model_atom.ordinal_id is an ordinal identifer for each atom in the PDBX_CHEM_COMP_MODEL_ATOM list.

Returns:

IntColumn

getModelId

public StrColumn getModelId()

This data item is a pointer to _pdbx_chem_comp_model.id in the PDBX_CHEM_COMP_MODEL category.

Returns:

StrColumn

getCharge

public IntColumn getCharge()

The net integer charge assigned to this atom. This is the formal charge assignment normally found in chemical diagrams.

Returns:

IntColumn

getModelCartnX

public FloatColumn getModelCartnX()

The x component of the coordinates for this atom in this component model specified as orthogonal angstroms.

Returns:

FloatColumn

getModelCartnY

public FloatColumn getModelCartnY()

The y component of the coordinates for this atom in this component model specified as orthogonal angstroms.

Returns:

FloatColumn

getModelCartnZ

public FloatColumn getModelCartnZ()

The z component of the coordinates for this atom in this component model specified as orthogonal angstroms.

Returns:

FloatColumn

getTypeSymbol

public StrColumn getTypeSymbol()

The code used to identify the atom species representing this atom type. Normally this code is the element symbol.

Returns:

StrColumn