Package org.rcsb.cif.model.generated

Class PdbxBranchScheme

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxBranchScheme

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxBranchScheme
extends BaseCategory

The PDBX_BRANCH_SCHEME category provides residue level nomenclature mapping for branch chain entities.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxBranchScheme(String name)
PdbxBranchScheme(String name, int rowCount, Object[] encodedColumns)
PdbxBranchScheme(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAsymId()	Pointer to _atom_site.label_asym_id.
StrColumn	getAuthAsymId()	This data item is a pointer to _atom_site.pdbx_auth_asym_id in the ATOM_SITE category.
StrColumn	getAuthMonId()	This data item is a pointer to _atom_site.pdbx_auth_comp_id in the ATOM_SITE category.
StrColumn	getAuthSeqNum()	This data item is a pointer to _atom_site.pdbx_auth_seq_id in the ATOM_SITE category.
StrColumn	getEntityId()	This data item is a pointer to _entity.id in the ENTITY category.
StrColumn	getHetero()	A flag to indicate whether this monomer in the entity is heterogeneous in sequence.
StrColumn	getMonId()	This data item is a pointer to _atom_site.label_comp_id in the PDBX_ENTITY_BRANCH_LIST category.
IntColumn	getNum()	This data item is a pointer to _pdbx_entity_branch_list.num in the PDBX_ENTITY_BRANCH_LIST category.
StrColumn	getPdbAsymId()	This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
StrColumn	getPdbMonId()	This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
StrColumn	getPdbSeqNum()	This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxBranchScheme

public PdbxBranchScheme(String name,
                        Map<String,Column> columns)

PdbxBranchScheme

public PdbxBranchScheme(String name,
                        int rowCount,
                        Object[] encodedColumns)

PdbxBranchScheme

public PdbxBranchScheme(String name)

Method Detail

getEntityId

public StrColumn getEntityId()

This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getHetero

public StrColumn getHetero()

A flag to indicate whether this monomer in the entity is heterogeneous in sequence.

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

Pointer to _atom_site.label_asym_id.

Returns:

StrColumn

getMonId

public StrColumn getMonId()

This data item is a pointer to _atom_site.label_comp_id in the PDBX_ENTITY_BRANCH_LIST category.

Returns:

StrColumn

getNum

public IntColumn getNum()

This data item is a pointer to _pdbx_entity_branch_list.num in the PDBX_ENTITY_BRANCH_LIST category.

Returns:

IntColumn

getPdbAsymId

public StrColumn getPdbAsymId()

This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getPdbSeqNum

public StrColumn getPdbSeqNum()

This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getPdbMonId

public StrColumn getPdbMonId()

This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthAsymId

public StrColumn getAuthAsymId()

This data item is a pointer to _atom_site.pdbx_auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqNum

public StrColumn getAuthSeqNum()

This data item is a pointer to _atom_site.pdbx_auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthMonId

public StrColumn getAuthMonId()

This data item is a pointer to _atom_site.pdbx_auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn