Package org.rcsb.cif.model.generated

Class NdbStructNaBasePairStep

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class NdbStructNaBasePairStep
extends BaseCategory
    Data items in the NDB_STRUCT_NA_BASE_PAIR_STEP category record details of base pair step interactions.

    • Constructor Detail

      • NdbStructNaBasePairStep

        public NdbStructNaBasePairStep​(String name,
                               Map<String,​Column> columns)

      • NdbStructNaBasePairStep

        public NdbStructNaBasePairStep​(String name,
                               int rowCount,
                               Object[] encodedColumns)

      • NdbStructNaBasePairStep

        public NdbStructNaBasePairStep​(String name)

    • Method Detail

      • getModelNumber

        public IntColumn getModelNumber()
        Describes the model number of the the base pair step. This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
        Returns:
        IntColumn

      • getStepNumber

        public IntColumn getStepNumber()
        The sequence number of this step in the step sequence.
        Returns:
        IntColumn

      • getStepName

        public StrColumn getStepName()
        The text name of this step.
        Returns:
        StrColumn

      • getILabelAsymId1

        public StrColumn getILabelAsymId1()
        Describes the asym id of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getILabelCompId1

        public StrColumn getILabelCompId1()
        Describes the component id of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getILabelSeqId1

        public IntColumn getILabelSeqId1()
        Describes the sequence number of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getISymmetry1

        public StrColumn getISymmetry1()
        Describes the symmetry operation that should be applied to the coordinates of the i-th base to generate the first partner in the first base pair of the step.
        Returns:
        StrColumn

      • getJLabelAsymId1

        public StrColumn getJLabelAsymId1()
        Describes the asym id of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJLabelCompId1

        public StrColumn getJLabelCompId1()
        Describes the component id of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJLabelSeqId1

        public IntColumn getJLabelSeqId1()
        Describes the sequence number of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getJSymmetry1

        public StrColumn getJSymmetry1()
        Describes the symmetry operation that should be applied to the coordinates of the j-th base to generate the second partner in the first base pair of the step.
        Returns:
        StrColumn

      • getILabelAsymId2

        public StrColumn getILabelAsymId2()
        Describes the asym id of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getILabelCompId2

        public StrColumn getILabelCompId2()
        Describes the component id of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getILabelSeqId2

        public IntColumn getILabelSeqId2()
        Describes the sequence number of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getISymmetry2

        public StrColumn getISymmetry2()
        Describes the symmetry operation that should be applied to the coordinates of the i-th base to generate the first partner in the second base pair of the step.
        Returns:
        StrColumn

      • getJLabelAsymId2

        public StrColumn getJLabelAsymId2()
        Describes the asym id of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJLabelCompId2

        public StrColumn getJLabelCompId2()
        Describes the component id of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJLabelSeqId2

        public IntColumn getJLabelSeqId2()
        Describes the sequence number of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getJSymmetry2

        public StrColumn getJSymmetry2()
        Describes the symmetry operation that should be applied to the coordinates of the j-th base to generate the second partner in the second base pair of the step.
        Returns:
        StrColumn

      • getIAuthAsymId1

        public StrColumn getIAuthAsymId1()
        Describes the author's asym id of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getIAuthSeqId1

        public StrColumn getIAuthSeqId1()
        Describes the author's sequence number of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getIPDBInsCode1

        public StrColumn getIPDBInsCode1()
        Describes the PDB insertion code of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJAuthAsymId1

        public StrColumn getJAuthAsymId1()
        Describes the author's asym id of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJAuthSeqId1

        public StrColumn getJAuthSeqId1()
        Describes the author's sequence number of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJPDBInsCode1

        public StrColumn getJPDBInsCode1()
        Describes the PDB insertion code of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn

      • getIAuthAsymId2

        public StrColumn getIAuthAsymId2()
        Describes the author's asym id of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getIAuthSeqId2

        public StrColumn getIAuthSeqId2()
        Describes the author's sequence number of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getIPDBInsCode2

        public StrColumn getIPDBInsCode2()
        Describes the PDB insertion code of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJAuthAsymId2

        public StrColumn getJAuthAsymId2()
        Describes the author's asym id of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJAuthSeqId2

        public StrColumn getJAuthSeqId2()
        Describes the author's sequence number of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getJPDBInsCode2

        public StrColumn getJPDBInsCode2()
        Describes the PDB insertion code of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn

      • getShift

        public FloatColumn getShift()
        The value of the base pair step shift parameter.
        Returns:
        FloatColumn

      • getSlide

        public FloatColumn getSlide()
        The value of the base pair step slide parameter.
        Returns:
        FloatColumn

      • getRise

        public FloatColumn getRise()
        The value of the base pair step rise parameter.
        Returns:
        FloatColumn

      • getTilt

        public FloatColumn getTilt()
        The value of the base pair step tilt parameter.
        Returns:
        FloatColumn

      • getRoll

        public FloatColumn getRoll()
        The value of the base pair step roll parameter.
        Returns:
        FloatColumn

      • getTwist

        public FloatColumn getTwist()
        The value of the base pair step twist parameter.
        Returns:
        FloatColumn

      • getXDisplacement

        public FloatColumn getXDisplacement()
        The value of the base pair step X displacement parameter.
        Returns:
        FloatColumn

      • getYDisplacement

        public FloatColumn getYDisplacement()
        The value of the base pair step Y displacement parameter.
        Returns:
        FloatColumn

      • getHelicalRise

        public FloatColumn getHelicalRise()
        The value of the base pair step helical rise parameter.
        Returns:
        FloatColumn

      • getInclination

        public FloatColumn getInclination()
        The value of the base pair step inclination parameter.
        Returns:
        FloatColumn

      • getTip

        public FloatColumn getTip()
        The value of the base pair step twist parameter.
        Returns:
        FloatColumn

      • getHelicalTwist

        public FloatColumn getHelicalTwist()
        The value of the base pair step helical twist parameter.
        Returns:
        FloatColumn