java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.NdbStructNaBasePair

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class NdbStructNaBasePair
extends BaseCategory
```
Data items in the NDB_STRUCT_NA_BASE_PAIR category record details of base pairing interactions.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`NdbStructNaBasePair(String name)`
`NdbStructNaBasePair(String name, int rowCount, Object[] encodedColumns)`
`NdbStructNaBasePair(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`FloatColumn`	`getBuckle()`	The value of the base pair buckle parameter.
`IntColumn`	`getHbondType12()`	Base pair classification of Westhoff and Leontis.
`IntColumn`	`getHbondType28()`	Base pair classification of Saenger
`StrColumn`	`getIAuthAsymId()`	Describes the asym id of the i-th base in the base pair.
`StrColumn`	`getIAuthSeqId()`	Describes the sequence number of the i-th base in the base pair.
`StrColumn`	`getILabelAsymId()`	Describes the asym id of the i-th base in the base pair.
`StrColumn`	`getILabelCompId()`	Describes the component id of the i-th base in the base pair.
`IntColumn`	`getILabelSeqId()`	Describes the sequence number of the i-th base in the base pair.
`StrColumn`	`getIPDBInsCode()`	Describes the PDB insertion code of the i-th base in the base pair.
`StrColumn`	`getISymmetry()`	Describes the symmetry operation that should be applied to the coordinates of the i-th base to generate the first partner in the base pair.
`StrColumn`	`getJAuthAsymId()`	Describes the asym id of the j-th base in the base pair.
`StrColumn`	`getJAuthSeqId()`	Describes the sequence number of the j-th base in the base pair.
`StrColumn`	`getJLabelAsymId()`	Describes the asym id of the j-th base in the base pair.
`StrColumn`	`getJLabelCompId()`	Describes the component id of the j-th base in the base pair.
`IntColumn`	`getJLabelSeqId()`	Describes the sequence number of the j-th base in the base pair.
`StrColumn`	`getJPDBInsCode()`	Describes the PDB insertion code of the j-th base in the base pair.
`StrColumn`	`getJSymmetry()`	Describes the symmetry operation that should be applied to the coordinates of the j-th base to generate the second partner in the base pair.
`IntColumn`	`getModelNumber()`	Describes the model number of the the base pair.
`FloatColumn`	`getOpening()`	The value of the base pair opening parameter.
`StrColumn`	`getPairName()`	Text label for this base pair.
`IntColumn`	`getPairNumber()`	Sequential number of pair in the pair sequence.
`FloatColumn`	`getPropeller()`	The value of the base pair propeller parameter.
`FloatColumn`	`getShear()`	The value of the base pair shear parameter.
`FloatColumn`	`getStagger()`	The value of the base pair stagger parameter.
`FloatColumn`	`getStretch()`	The value of the base pair stretch parameter.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - NdbStructNaBasePair
```
public NdbStructNaBasePair(String name,
                           Map<String,Column> columns)
```
  - NdbStructNaBasePair
```
public NdbStructNaBasePair(String name,
                           int rowCount,
                           Object[] encodedColumns)
```
  - NdbStructNaBasePair
```
public NdbStructNaBasePair(String name)
```
- Method Detail
  - getModelNumber
```
public IntColumn getModelNumber()
```
    Describes the model number of the the base pair. This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getPairNumber
```
public IntColumn getPairNumber()
```
    Sequential number of pair in the pair sequence.
    
    Returns:
    
    IntColumn
  - getPairName
```
public StrColumn getPairName()
```
    Text label for this base pair.
    
    Returns:
    
    StrColumn
  - getILabelAsymId
```
public StrColumn getILabelAsymId()
```
    Describes the asym id of the i-th base in the base pair. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getILabelCompId
```
public StrColumn getILabelCompId()
```
    Describes the component id of the i-th base in the base pair. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getILabelSeqId
```
public IntColumn getILabelSeqId()
```
    Describes the sequence number of the i-th base in the base pair. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getISymmetry
```
public StrColumn getISymmetry()
```
    Describes the symmetry operation that should be applied to the coordinates of the i-th base to generate the first partner in the base pair.
    
    Returns:
    
    StrColumn
  - getJLabelAsymId
```
public StrColumn getJLabelAsymId()
```
    Describes the asym id of the j-th base in the base pair. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getJLabelCompId
```
public StrColumn getJLabelCompId()
```
    Describes the component id of the j-th base in the base pair. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getJLabelSeqId
```
public IntColumn getJLabelSeqId()
```
    Describes the sequence number of the j-th base in the base pair. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getJSymmetry
```
public StrColumn getJSymmetry()
```
    Describes the symmetry operation that should be applied to the coordinates of the j-th base to generate the second partner in the base pair.
    
    Returns:
    
    StrColumn
  - getIAuthAsymId
```
public StrColumn getIAuthAsymId()
```
    Describes the asym id of the i-th base in the base pair. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getIAuthSeqId
```
public StrColumn getIAuthSeqId()
```
    Describes the sequence number of the i-th base in the base pair. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getIPDBInsCode
```
public StrColumn getIPDBInsCode()
```
    Describes the PDB insertion code of the i-th base in the base pair. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getJAuthAsymId
```
public StrColumn getJAuthAsymId()
```
    Describes the asym id of the j-th base in the base pair. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getJAuthSeqId
```
public StrColumn getJAuthSeqId()
```
    Describes the sequence number of the j-th base in the base pair. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getJPDBInsCode
```
public StrColumn getJPDBInsCode()
```
    Describes the PDB insertion code of the j-th base in the base pair. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getShear
```
public FloatColumn getShear()
```
    The value of the base pair shear parameter.
    
    Returns:
    
    FloatColumn
  - getStretch
```
public FloatColumn getStretch()
```
    The value of the base pair stretch parameter.
    
    Returns:
    
    FloatColumn
  - getStagger
```
public FloatColumn getStagger()
```
    The value of the base pair stagger parameter.
    
    Returns:
    
    FloatColumn
  - getBuckle
```
public FloatColumn getBuckle()
```
    The value of the base pair buckle parameter.
    
    Returns:
    
    FloatColumn
  - getPropeller
```
public FloatColumn getPropeller()
```
    The value of the base pair propeller parameter.
    
    Returns:
    
    FloatColumn
  - getOpening
```
public FloatColumn getOpening()
```
    The value of the base pair opening parameter.
    
    Returns:
    
    FloatColumn
  - getHbondType12
```
public IntColumn getHbondType12()
```
    Base pair classification of Westhoff and Leontis.
    
    Returns:
    
    IntColumn
  - getHbondType28
```
public IntColumn getHbondType28()
```
    Base pair classification of Saenger
    
    Returns:
    
    IntColumn

Class NdbStructNaBasePair

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

NdbStructNaBasePair

NdbStructNaBasePair

NdbStructNaBasePair

Method Detail

getModelNumber

getPairNumber

getPairName

getILabelAsymId

getILabelCompId

getILabelSeqId

getISymmetry

getJLabelAsymId

getJLabelCompId

getJLabelSeqId

getJSymmetry

getIAuthAsymId

getIAuthSeqId

getIPDBInsCode

getJAuthAsymId

getJAuthSeqId

getJPDBInsCode

getShear

getStretch

getStagger

getBuckle

getPropeller

getOpening

getHbondType12

getHbondType28