Package org.rcsb.cif.model.generated

Class IhmStructAssembly

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmStructAssembly

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmStructAssembly
extends BaseCategory

Data items in the IHM_STRUCT_ASSEMBLY category records the details of the structural assemblies and used in the IHM modeling.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmStructAssembly(String name)
IhmStructAssembly(String name, int rowCount, Object[] encodedColumns)
IhmStructAssembly(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
IntColumn	getAssemblyId()	An identifier for the structural assembly.
StrColumn	getAsymId()	An asym/strand identifier for the component in the assembly.
StrColumn	getEntityDescription()	A text description of the molecular entity
StrColumn	getEntityId()	A unique identifier for distinct molecular entities.
IntColumn	getOrdinalId()	A unique identifier for the structural assembly description.
IntColumn	getParentAssemblyId()	The parent of this assembly in a hierarchy.
IntColumn	getSeqIdBegin()	The starting residue index for the sequence segment of the entity instance that is part of the assembly.
IntColumn	getSeqIdEnd()	The ending residue index for the sequence segment of the entity instance that is part of the assembly.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmStructAssembly

public IhmStructAssembly(String name,
                         Map<String,Column> columns)

IhmStructAssembly

public IhmStructAssembly(String name,
                         int rowCount,
                         Object[] encodedColumns)

IhmStructAssembly

public IhmStructAssembly(String name)

Method Detail

getOrdinalId

public IntColumn getOrdinalId()

A unique identifier for the structural assembly description.

Returns:

IntColumn

getAssemblyId

public IntColumn getAssemblyId()

An identifier for the structural assembly. This data item will remain the same for all components of an assembly.

Returns:

IntColumn

getParentAssemblyId

public IntColumn getParentAssemblyId()

The parent of this assembly in a hierarchy. This data item is an internal category pointer to _ihm_struct_assembly.assembly_id This data item should point to the assembly id of the immediate parent in a hierarchy. By convention, the full assembly (top of hierarchy) is assigned parent id 0 (zero). In case of assemblies that do not conform to a hierarchy, _ihm_struct_assembly.parent_assembly_id is the same as _ihm_struct_assembly.assembly_id indicating a self-parent.

Returns:

IntColumn

getEntityDescription

public StrColumn getEntityDescription()

A text description of the molecular entity

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

A unique identifier for distinct molecular entities. This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

An asym/strand identifier for the component in the assembly. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.

Returns:

StrColumn

getSeqIdBegin

public IntColumn getSeqIdBegin()

The starting residue index for the sequence segment of the entity instance that is part of the assembly. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getSeqIdEnd

public IntColumn getSeqIdEnd()

The ending residue index for the sequence segment of the entity instance that is part of the assembly. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn