Package org.rcsb.cif.model.generated

Class IhmStartingModelSeqDif

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmStartingModelSeqDif

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmStartingModelSeqDif
extends BaseCategory

Data items in the IHM_STARTING_MODEL_SEQ_DIF category provide a mechanism for indicating and annotating point differences between the sequence of the entity or biological unit described in the data block and the sequence of the starting model used in the integrative modeling referenced from a database. The point differences may be due to point mutations introduced in the starting model or the presence of modified amino acid residues.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmStartingModelSeqDif(String name)
IhmStartingModelSeqDif(String name, int rowCount, Object[] encodedColumns)
IhmStartingModelSeqDif(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAsymId()	An asym/strand identifier for the entity molecule.
StrColumn	getCompId()	The component identifier for the residue.
StrColumn	getDbAsymId()	The asym/strand identifier for the entity molecule of the database starting model.
StrColumn	getDbCompId()	The correspinding component identifier for the residue in the database starting model.
StrColumn	getDbEntityId()	The molecular entity of the database starting model.
IntColumn	getDbSeqId()	The corresponding residue index of the database starting model.
StrColumn	getDetails()	A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the starting model referenced from a database.
StrColumn	getEntityId()	A unique identifier for the distinct molecular entities.
IntColumn	getOrdinalId()	A unique identifier for the entry.
IntColumn	getSeqId()	The residue index.
StrColumn	getStartingModelId()	Unique identifier for the starting model record.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmStartingModelSeqDif

public IhmStartingModelSeqDif(String name,
                              Map<String,Column> columns)

IhmStartingModelSeqDif

public IhmStartingModelSeqDif(String name,
                              int rowCount,
                              Object[] encodedColumns)

IhmStartingModelSeqDif

public IhmStartingModelSeqDif(String name)

Method Detail

getOrdinalId

public IntColumn getOrdinalId()

A unique identifier for the entry.

Returns:

IntColumn

getEntityId

public StrColumn getEntityId()

A unique identifier for the distinct molecular entities. This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY category.

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

An asym/strand identifier for the entity molecule. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.

Returns:

StrColumn

getSeqId

public IntColumn getSeqId()

The residue index. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getCompId

public StrColumn getCompId()

The component identifier for the residue. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getStartingModelId

public StrColumn getStartingModelId()

Unique identifier for the starting model record. This data item is a pointer to _ihm_starting_model_details.starting_model_id in the IHM_STARTING_MODEL_DETAILS category.

Returns:

StrColumn

getDbEntityId

public StrColumn getDbEntityId()

The molecular entity of the database starting model.

Returns:

StrColumn

getDbAsymId

public StrColumn getDbAsymId()

The asym/strand identifier for the entity molecule of the database starting model.

Returns:

StrColumn

getDbSeqId

public IntColumn getDbSeqId()

The corresponding residue index of the database starting model.

Returns:

IntColumn

getDbCompId

public StrColumn getDbCompId()

The correspinding component identifier for the residue in the database starting model.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the starting model referenced from a database.

Returns:

StrColumn