Package org.rcsb.cif.model.generated

Class IhmStartingModelCoord

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmStartingModelCoord
extends BaseCategory
    Data items in the IHM_STARTING_MODEL_COORD category records the coordinates for structural templates used as starting inputs in the integrative model building tasks.

    • Constructor Detail

      • IhmStartingModelCoord

        public IhmStartingModelCoord​(String name,
                             int rowCount,
                             Object[] encodedColumns)

      • IhmStartingModelCoord

        public IhmStartingModelCoord​(String name)

    • Method Detail

      • getOrdinalId

        public IntColumn getOrdinalId()
        A unique identifier for this coordinate position.
        Returns:
        IntColumn

      • getStartingModelId

        public StrColumn getStartingModelId()
        The identifier for the starting structural model. This data item is a pointer to _ihm_starting_model_details.starting_model_id in the IHM_STARTING_MODEL_DETAILS category.
        Returns:
        StrColumn

      • getGroupPDB

        public StrColumn getGroupPDB()
        The group of atoms to which the atom site in the starting model belongs. This data item is provided for compatibility with the original Protein Data Bank format, and only for that purpose.
        Returns:
        StrColumn

      • getId

        public IntColumn getId()
        The serial number for this coordinate position.
        Returns:
        IntColumn

      • getTypeSymbol

        public StrColumn getTypeSymbol()
        The atom type symbol(element symbol) corresponding to this coordinate position.
        Returns:
        StrColumn

      • getEntityId

        public StrColumn getEntityId()
        The entity identifier corresponding to this coordinate position. This data item is a pointer to _entity.id in the ENTITY category.
        Returns:
        StrColumn

      • getAtomId

        public StrColumn getAtomId()
        The atom identifier/name corresponding to this coordinate position. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
        Returns:
        StrColumn

      • getCompId

        public StrColumn getCompId()
        The component identifier corresponding to this coordinate position. This data item is a pointer to _chem_comp.id in the CHEM_COMP category.
        Returns:
        StrColumn

      • getSeqId

        public IntColumn getSeqId()
        The sequence index corresponding this to coordinate position. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY category.
        Returns:
        IntColumn

      • getAsymId

        public StrColumn getAsymId()
        The asym/strand id corresponding to this coordinate position. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
        Returns:
        StrColumn

      • getCartnX

        public FloatColumn getCartnX()
        The Cartesian X component corresponding to this coordinate position.
        Returns:
        FloatColumn

      • getCartnY

        public FloatColumn getCartnY()
        The Cartesian Y component corresponding to this coordinate position.
        Returns:
        FloatColumn

      • getCartnZ

        public FloatColumn getCartnZ()
        The Cartesian Z component corresponding to this coordinate position.
        Returns:
        FloatColumn

      • getBIsoOrEquiv

        public FloatColumn getBIsoOrEquiv()
        The isotropic temperature factor corresponding to this coordinate position.
        Returns:
        FloatColumn

      • getFormalCharge

        public IntColumn getFormalCharge()
        The formal charge corresponding to this coordinate position.
        Returns:
        IntColumn