Package org.rcsb.cif.model.generated

Class IhmStartingComparativeModels

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmStartingComparativeModels
extends BaseCategory
    Data items in the IHM_STARTING_COMPARATIVE_MODELS category records additional details about comparative models used as starting inputs in the integrative model building process.

    • Constructor Detail

      • IhmStartingComparativeModels

        public IhmStartingComparativeModels​(String name,
                                    Map<String,​Column> columns)

      • IhmStartingComparativeModels

        public IhmStartingComparativeModels​(String name,
                                    int rowCount,
                                    Object[] encodedColumns)

      • IhmStartingComparativeModels

        public IhmStartingComparativeModels​(String name)

    • Method Detail

      • getOrdinalId

        public IntColumn getOrdinalId()
        A unique identifier for the starting comparative model.
        Returns:
        IntColumn

      • getStartingModelId

        public StrColumn getStartingModelId()
        The identifier for the starting structural model. This data item is a pointer to _ihm_starting_model_details.starting_model_id in the IHM_STARTING_MODEL_DETAILS category.
        Returns:
        StrColumn

      • getStartingModelAuthAsymId

        public StrColumn getStartingModelAuthAsymId()
        The chainId/auth_asym_id corresponding to the starting model.
        Returns:
        StrColumn

      • getStartingModelSeqIdBegin

        public IntColumn getStartingModelSeqIdBegin()
        The starting residue index of the starting model.
        Returns:
        IntColumn

      • getStartingModelSeqIdEnd

        public IntColumn getStartingModelSeqIdEnd()
        The ending residue index of the starting model.
        Returns:
        IntColumn

      • getTemplateAuthAsymId

        public StrColumn getTemplateAuthAsymId()
        The chainId/auth_asym_id corresponding to the template.
        Returns:
        StrColumn

      • getTemplateSeqIdBegin

        public IntColumn getTemplateSeqIdBegin()
        The starting residue index of the template.
        Returns:
        IntColumn

      • getTemplateSeqIdEnd

        public IntColumn getTemplateSeqIdEnd()
        The ending residue index of the template.
        Returns:
        IntColumn

      • getTemplateSequenceIdentity

        public FloatColumn getTemplateSequenceIdentity()
        The percentage sequence identity between the template sequence and the comparative model sequence.
        Returns:
        FloatColumn

      • getTemplateSequenceIdentityDenominator

        public StrColumn getTemplateSequenceIdentityDenominator()
        The denominator used while calculating the sequence identity provided in _ihm_starting_comparative_models.template_sequence_identity.
        Returns:
        StrColumn

      • getTemplateDatasetListId

        public IntColumn getTemplateDatasetListId()
        The dataset list id corresponding to the template used to obtain the comparative model. This data item is a pointer to _ihm_dataset_list.id in the IHM_DATASET_LIST category.
        Returns:
        IntColumn

      • getAlignmentFileId

        public IntColumn getAlignmentFileId()
        The file id corresponding to the sequence alignment of the template sequence and the comparative model sequence. This data item is a pointer to _ihm_external_files.id in the IHM_EXTERNAL_FILES category.
        Returns:
        IntColumn