Package org.rcsb.cif.model.generated

Class IhmSphereObjSite

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmSphereObjSite

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmSphereObjSite
extends BaseCategory

Data items in the IHM_SPHERE_OBJ_SITE category records the details of the spherical objects modeled in the integrative structural model.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmSphereObjSite(String name)
IhmSphereObjSite(String name, int rowCount, Object[] encodedColumns)
IhmSphereObjSite(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAsymId()	An asym/strand identifier corresponding to this sphere object.
FloatColumn	getCartnX()	The Cartesian X component corresponding to this sphere object.
FloatColumn	getCartnY()	The Cartesian Y component corresponding to this sphere object.
FloatColumn	getCartnZ()	The Cartesian Z component corresponding to this sphere object.
StrColumn	getEntityId()	The entity identifier corresponding to this sphere object.
IntColumn	getModelId()	The model id corresponding to the sphere object.
FloatColumn	getObjectRadius()	The radius associated with the primitive sphere object at this position.
IntColumn	getOrdinalId()	A unique identifier for this pseudo atom / sphere object.
FloatColumn	getRmsf()	The Root Mean Square Fluctuation (RMSF) observed in the primitive sphere object at this position.
IntColumn	getSeqIdBegin()	The leading sequence index corresponding to this sphere object.
IntColumn	getSeqIdEnd()	The trailing sequence index corresponding to this sphere object.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmSphereObjSite

public IhmSphereObjSite(String name,
                        Map<String,Column> columns)

IhmSphereObjSite

public IhmSphereObjSite(String name,
                        int rowCount,
                        Object[] encodedColumns)

IhmSphereObjSite

public IhmSphereObjSite(String name)

Method Detail

getOrdinalId

public IntColumn getOrdinalId()

A unique identifier for this pseudo atom / sphere object.

Returns:

IntColumn

getEntityId

public StrColumn getEntityId()

The entity identifier corresponding to this sphere object. This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getSeqIdBegin

public IntColumn getSeqIdBegin()

The leading sequence index corresponding to this sphere object. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY category.

Returns:

IntColumn

getSeqIdEnd

public IntColumn getSeqIdEnd()

The trailing sequence index corresponding to this sphere object. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY category.

Returns:

IntColumn

getAsymId

public StrColumn getAsymId()

An asym/strand identifier corresponding to this sphere object. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.

Returns:

StrColumn

getCartnX

public FloatColumn getCartnX()

The Cartesian X component corresponding to this sphere object.

Returns:

FloatColumn

getCartnY

public FloatColumn getCartnY()

The Cartesian Y component corresponding to this sphere object.

Returns:

FloatColumn

getCartnZ

public FloatColumn getCartnZ()

The Cartesian Z component corresponding to this sphere object.

Returns:

FloatColumn

getObjectRadius

public FloatColumn getObjectRadius()

The radius associated with the primitive sphere object at this position.

Returns:

FloatColumn

getRmsf

public FloatColumn getRmsf()

The Root Mean Square Fluctuation (RMSF) observed in the primitive sphere object at this position.

Returns:

FloatColumn

getModelId

public IntColumn getModelId()

The model id corresponding to the sphere object. This data item is a pointer to _ihm_model_list.model_id in the IHM_MODEL_LIST category.

Returns:

IntColumn