Package org.rcsb.cif.model.generated

Class IhmResiduesNotModeled

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmResiduesNotModeled

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmResiduesNotModeled
extends BaseCategory

Data items in the IHM_RESIDUES_NOT_MODELED category record the details of the residues that are defined in the IHM_STRUCT_ASSEMBLY category but are missing in the three-dimensional model (ATOM_SITE, IHM_SPHERE_OBJ_SITE, IHM_GAUSSIAN_OBJ_SITE categories) i.e., residues in the assembly that are not modeled.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmResiduesNotModeled(String name)
IhmResiduesNotModeled(String name, int rowCount, Object[] encodedColumns)
IhmResiduesNotModeled(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAsymId()	An asym/strand identifier.
StrColumn	getDetails()	Additional details regarding the missing segments.
StrColumn	getEntityDescription()	A text description of the molecular entity, whose residues are not modeled.
StrColumn	getEntityId()	A unique identifier to the molecular entity, whose residues are not modeled.
IntColumn	getModelId()	An identifier for the structural model.
IntColumn	getOrdinalId()	A unique identifier for the category.
StrColumn	getReason()	The reason why the residues are missing in the structural model.
IntColumn	getSeqIdBegin()	The starting residue index for the sequence segment of missing residues.
IntColumn	getSeqIdEnd()	The ending residue index for the sequence segment of missing residues.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmResiduesNotModeled

public IhmResiduesNotModeled(String name,
                             Map<String,Column> columns)

IhmResiduesNotModeled

public IhmResiduesNotModeled(String name,
                             int rowCount,
                             Object[] encodedColumns)

IhmResiduesNotModeled

public IhmResiduesNotModeled(String name)

Method Detail

getOrdinalId

public IntColumn getOrdinalId()

A unique identifier for the category.

Returns:

IntColumn

getModelId

public IntColumn getModelId()

An identifier for the structural model. This data item is a pointer to _ihm_model_list.model_id in the IHM_MODEL_LIST category.

Returns:

IntColumn

getEntityDescription

public StrColumn getEntityDescription()

A text description of the molecular entity, whose residues are not modeled. This data item is a pointer to _entity.pdbx_description in the ENTITY category.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

A unique identifier to the molecular entity, whose residues are not modeled. This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

An asym/strand identifier. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.

Returns:

StrColumn

getSeqIdBegin

public IntColumn getSeqIdBegin()

The starting residue index for the sequence segment of missing residues. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getSeqIdEnd

public IntColumn getSeqIdEnd()

The ending residue index for the sequence segment of missing residues. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getReason

public StrColumn getReason()

The reason why the residues are missing in the structural model.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

Additional details regarding the missing segments.

Returns:

StrColumn