Package org.rcsb.cif.model.generated

Class IhmPolyResidueFeature

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmPolyResidueFeature

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmPolyResidueFeature
extends BaseCategory

Data items in the IHM_POLY_RESIDUE_FEATURE category provides the defintions required to select a specific residue or a set of residues that may or may not be in a contiguous range.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmPolyResidueFeature(String name)
IhmPolyResidueFeature(String name, int rowCount, Object[] encodedColumns)
IhmPolyResidueFeature(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAsymId()	An asym/strand identifier for the residue / residue range, if applicable.
StrColumn	getCompIdBegin()	The component identifier of the beginning residue / residue range.
StrColumn	getCompIdEnd()	The component identifier of the ending residue / residue range.
StrColumn	getEntityId()	The entity identifier for residue / residue range.
IntColumn	getFeatureId()	An identifier for the selected residue / residue range feature.
StrColumn	getInterfaceResidueFlag()	A flag to indicate if the feature is an interface residue, identified by experiments and therefore, used to build spatial restraints during modeling.
IntColumn	getOrdinalId()	A unique identifier for the category.
StrColumn	getRepAtom()	If _ihm_poly_residue_feature.granularity is by-residue, then indicate the atom used to represent the residue in three-dimension.
StrColumn	getResidueRangeGranularity()	The coarse-graining information, if the feature is a residue range.
IntColumn	getSeqIdBegin()	The sequence index of the beginning residue / residue range.
IntColumn	getSeqIdEnd()	The sequence index of the ending residue / residue range.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmPolyResidueFeature

public IhmPolyResidueFeature(String name,
                             Map<String,Column> columns)

IhmPolyResidueFeature

public IhmPolyResidueFeature(String name,
                             int rowCount,
                             Object[] encodedColumns)

IhmPolyResidueFeature

public IhmPolyResidueFeature(String name)

Method Detail

getOrdinalId

public IntColumn getOrdinalId()

A unique identifier for the category.

Returns:

IntColumn

getFeatureId

public IntColumn getFeatureId()

An identifier for the selected residue / residue range feature. This data item is a pointer to _ihm_feature_list.feature_id in the IHM_FEATURE_LIST category.

Returns:

IntColumn

getEntityId

public StrColumn getEntityId()

The entity identifier for residue / residue range. This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

An asym/strand identifier for the residue / residue range, if applicable. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.

Returns:

StrColumn

getCompIdBegin

public StrColumn getCompIdBegin()

The component identifier of the beginning residue / residue range. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getCompIdEnd

public StrColumn getCompIdEnd()

The component identifier of the ending residue / residue range. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getSeqIdBegin

public IntColumn getSeqIdBegin()

The sequence index of the beginning residue / residue range. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getSeqIdEnd

public IntColumn getSeqIdEnd()

The sequence index of the ending residue / residue range. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getResidueRangeGranularity

public StrColumn getResidueRangeGranularity()

The coarse-graining information, if the feature is a residue range.

Returns:

StrColumn

getRepAtom

public StrColumn getRepAtom()

If _ihm_poly_residue_feature.granularity is by-residue, then indicate the atom used to represent the residue in three-dimension. Default is the C-alpha atom.

Returns:

StrColumn

getInterfaceResidueFlag

public StrColumn getInterfaceResidueFlag()

A flag to indicate if the feature is an interface residue, identified by experiments and therefore, used to build spatial restraints during modeling.

Returns:

StrColumn