Package org.rcsb.cif.model.generated

Class IhmModelRepresentation

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmModelRepresentation

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmModelRepresentation
extends BaseCategory

Data items in the IHM_MODEL_REPRESENTATION category records the details about the architecture and representation of structural models created by the integrative model building tasks. This category handles the multi-scale model representation, if employed.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmModelRepresentation(String name)
IhmModelRepresentation(String name, int rowCount, Object[] encodedColumns)
IhmModelRepresentation(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getEntityAsymId()	An asym/strand identifier for the entity molecule.
StrColumn	getEntityDescription()	A text description of the molecular entity
StrColumn	getEntityId()	A unique identifier distinct molecular entities.
StrColumn	getModelGranularity()	The level of detail at which model primitive objects are applied to the structure.
StrColumn	getModelMode()	The manner in which the segment is modeled.
IntColumn	getModelObjectCount()	The number of primitive objects used to model a feature in the case of 'by-feature' granularity.
StrColumn	getModelObjectPrimitive()	The primitive object used to model this segment.
IntColumn	getOrdinalId()	A unique identifier for the model details record.
IntColumn	getRepresentationId()	An identifier that collects or groups together a set of representations.
IntColumn	getSegmentId()	An identifier for the residue range segment within the structural model.
IntColumn	getSeqIdBegin()	The leading residue index for the sequence segment modeled using this starting model.
IntColumn	getSeqIdEnd()	The trailing residue index for the sequence segment modeled using this starting model.
StrColumn	getStartingModelId()	The identifier for the starting structural model.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmModelRepresentation

public IhmModelRepresentation(String name,
                              Map<String,Column> columns)

IhmModelRepresentation

public IhmModelRepresentation(String name,
                              int rowCount,
                              Object[] encodedColumns)

IhmModelRepresentation

public IhmModelRepresentation(String name)

Method Detail

getOrdinalId

public IntColumn getOrdinalId()

A unique identifier for the model details record.

Returns:

IntColumn

getRepresentationId

public IntColumn getRepresentationId()

An identifier that collects or groups together a set of representations. This data item may be used to identify a complete model representation.

Returns:

IntColumn

getSegmentId

public IntColumn getSegmentId()

An identifier for the residue range segment within the structural model.

Returns:

IntColumn

getEntityId

public StrColumn getEntityId()

A unique identifier distinct molecular entities. This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getEntityDescription

public StrColumn getEntityDescription()

A text description of the molecular entity

Returns:

StrColumn

getEntityAsymId

public StrColumn getEntityAsymId()

An asym/strand identifier for the entity molecule. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.

Returns:

StrColumn

getSeqIdBegin

public IntColumn getSeqIdBegin()

The leading residue index for the sequence segment modeled using this starting model. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getSeqIdEnd

public IntColumn getSeqIdEnd()

The trailing residue index for the sequence segment modeled using this starting model. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getModelObjectPrimitive

public StrColumn getModelObjectPrimitive()

The primitive object used to model this segment.

Returns:

StrColumn

getStartingModelId

public StrColumn getStartingModelId()

The identifier for the starting structural model. This data item is a pointer to _ihm_starting_model_details.starting_model_id in the IHM_STARTING_MODEL_DETAILS category.

Returns:

StrColumn

getModelMode

public StrColumn getModelMode()

The manner in which the segment is modeled.

Returns:

StrColumn

getModelGranularity

public StrColumn getModelGranularity()

The level of detail at which model primitive objects are applied to the structure.

Returns:

StrColumn

getModelObjectCount

public IntColumn getModelObjectCount()

The number of primitive objects used to model a feature in the case of 'by-feature' granularity.

Returns:

IntColumn