Package org.rcsb.cif.model.generated

Class IhmInterfaceResidueFeature

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmInterfaceResidueFeature

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmInterfaceResidueFeature
extends BaseCategory

Data items in the IHM_INTERFACE_RESIDUE_FEATURE category captures the details of residues that are identified to be at the binding interface from experiments. This information is used by modeling software such as HADDOCK to create a set of ambiguous distance restraints at the binding interface between the molecular entities involved.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmInterfaceResidueFeature(String name)
IhmInterfaceResidueFeature(String name, int rowCount, Object[] encodedColumns)
IhmInterfaceResidueFeature(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getBindingPartnerAsymId()	An asym/strand identifier for the binding partner at the interface, if applicable.
StrColumn	getBindingPartnerEntityId()	The entity identifier of the binding partner at the interface.
IntColumn	getDatasetListId()	Identifier to the input data from which the interface residue is determined.
StrColumn	getDetails()	Additional details regarding the interface residue.
IntColumn	getFeatureId()	Identifier for the interface residue feature that defines the interface residue.
IntColumn	getOrdinalId()	A unique identifier for the category.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmInterfaceResidueFeature

public IhmInterfaceResidueFeature(String name,
                                  Map<String,Column> columns)

IhmInterfaceResidueFeature

public IhmInterfaceResidueFeature(String name,
                                  int rowCount,
                                  Object[] encodedColumns)

IhmInterfaceResidueFeature

public IhmInterfaceResidueFeature(String name)

Method Detail

getOrdinalId

public IntColumn getOrdinalId()

A unique identifier for the category.

Returns:

IntColumn

getFeatureId

public IntColumn getFeatureId()

Identifier for the interface residue feature that defines the interface residue. This data item is a pointer to _ihm_poly_residue_feature.feature_id in the IHM_POLY_RESIDUE_FEATURE category.

Returns:

IntColumn

getBindingPartnerEntityId

public StrColumn getBindingPartnerEntityId()

The entity identifier of the binding partner at the interface. This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getBindingPartnerAsymId

public StrColumn getBindingPartnerAsymId()

An asym/strand identifier for the binding partner at the interface, if applicable. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.

Returns:

StrColumn

getDatasetListId

public IntColumn getDatasetListId()

Identifier to the input data from which the interface residue is determined. This data item is a pointer to the _ihm_dataset_list.id in the IHM_DATASET_LIST category.

Returns:

IntColumn

getDetails

public StrColumn getDetails()

Additional details regarding the interface residue.

Returns:

StrColumn