Class IhmHydroxylRadicalFpRestraint

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class IhmHydroxylRadicalFpRestraint
    extends BaseCategory
    Data items in the IHM_HYDROXYL_RADICAL_FP_RESTRAINT category records the restraints derived from hydroxyl radical footprinting experiment. These restraints provide information regarding solvent accessible surface area of residues.
    • Constructor Detail

      • IhmHydroxylRadicalFpRestraint

        public IhmHydroxylRadicalFpRestraint​(String name,
                                             Map<String,​Column> columns)
      • IhmHydroxylRadicalFpRestraint

        public IhmHydroxylRadicalFpRestraint​(String name,
                                             int rowCount,
                                             Object[] encodedColumns)
      • IhmHydroxylRadicalFpRestraint

        public IhmHydroxylRadicalFpRestraint​(String name)
    • Method Detail

      • getId

        public IntColumn getId()
        A unique identifier for the hydroxyl radical footprinting restraint.
        Returns:
        IntColumn
      • getGroupId

        public IntColumn getGroupId()
        An identifier to group the hydroxyl radical footprinting restraints.
        Returns:
        IntColumn
      • getEntityDescription

        public StrColumn getEntityDescription()
        A text description of the molecular entity.
        Returns:
        StrColumn
      • getEntityId

        public StrColumn getEntityId()
        The entity identifier. This data item is a pointer to _entity.id in the ENTITY category.
        Returns:
        StrColumn
      • getAsymId

        public StrColumn getAsymId()
        An asym/strand identifier. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
        Returns:
        StrColumn
      • getCompId

        public StrColumn getCompId()
        The component identifier for the residue. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.
        Returns:
        StrColumn
      • getSeqId

        public IntColumn getSeqId()
        The sequence index for the residue. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
        Returns:
        IntColumn
      • getFpRate

        public FloatColumn getFpRate()
        The footprinting rate.
        Returns:
        FloatColumn
      • getFpRateError

        public FloatColumn getFpRateError()
        The footprinting rate error.
        Returns:
        FloatColumn
      • getLogPf

        public FloatColumn getLogPf()
        Log (base 10) protection factor.
        Returns:
        FloatColumn
      • getLogPfError

        public FloatColumn getLogPfError()
        Error of Log (base 10) protection factor.
        Returns:
        FloatColumn
      • getPredictedSasa

        public FloatColumn getPredictedSasa()
        The predicted solvent accessible surface area.
        Returns:
        FloatColumn
      • getDatasetListId

        public IntColumn getDatasetListId()
        Identifier to the hydroxyl radical footprinting dataset. This data item is a pointer to the _ihm_dataset_list.id in the IHM_DATASET_LIST category.
        Returns:
        IntColumn
      • getSoftwareId

        public IntColumn getSoftwareId()
        Identifier to the software used to obtain the restraint. This data item is a pointer to the _software.pdbx_ordinal in the SOFTWARE category.
        Returns:
        IntColumn