Package org.rcsb.cif.model.generated

Class IhmCrossLinkResultParameters

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmCrossLinkResultParameters

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmCrossLinkResultParameters
extends BaseCategory

Data items in the IHM_CROSS_LINK_RESULT_PARAMETERS category records the results of the crosslinking restraint parameters in the IHM modeling.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmCrossLinkResultParameters(String name)
IhmCrossLinkResultParameters(String name, int rowCount, Object[] encodedColumns)
IhmCrossLinkResultParameters(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
IntColumn	getModelId()	The model number corresponding to the cross link result presented.
IntColumn	getOrdinalId()	A unique identifier for the restraint/model combination.
FloatColumn	getPsi()	The uncertainty in the crosslinking experimental data; May be approximated to the false positive rate.
IntColumn	getRestraintId()	An identifier for the crosslink restraint between a pair of residues.
FloatColumn	getSigma1()	The uncertainty in the position of residue 1 in the crosslink arising due to the multi-scale nature of the model represention.
FloatColumn	getSigma2()	The uncertainty in the position of residue 2 in the crosslink arising due to the multi-scale nature of the model represention.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmCrossLinkResultParameters

public IhmCrossLinkResultParameters(String name,
                                    Map<String,Column> columns)

IhmCrossLinkResultParameters

public IhmCrossLinkResultParameters(String name,
                                    int rowCount,
                                    Object[] encodedColumns)

IhmCrossLinkResultParameters

public IhmCrossLinkResultParameters(String name)

Method Detail

getOrdinalId

public IntColumn getOrdinalId()

A unique identifier for the restraint/model combination.

Returns:

IntColumn

getRestraintId

public IntColumn getRestraintId()

An identifier for the crosslink restraint between a pair of residues. This data item is a pointer to _ihm_cross_link_restraint.id in the IHM_CROSS_LINK_RESTRAINT category.

Returns:

IntColumn

getModelId

public IntColumn getModelId()

The model number corresponding to the cross link result presented. This data item is a pointer to _ihm_model_list.model_id in the IHM_MODEL_LIST category.

Returns:

IntColumn

getPsi

public FloatColumn getPsi()

The uncertainty in the crosslinking experimental data; May be approximated to the false positive rate.

Returns:

FloatColumn

getSigma1

public FloatColumn getSigma1()

The uncertainty in the position of residue 1 in the crosslink arising due to the multi-scale nature of the model represention.

Returns:

FloatColumn

getSigma2

public FloatColumn getSigma2()

The uncertainty in the position of residue 2 in the crosslink arising due to the multi-scale nature of the model represention.

Returns:

FloatColumn