Package org.rcsb.cif.model.generated

Class IhmCrossLinkList

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.IhmCrossLinkList

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class IhmCrossLinkList
extends BaseCategory

Data items in the IHM_CROSS_LINK_LIST category records the list of spatial restraints derived from chemical crosslinking experiment.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
IhmCrossLinkList(String name)
IhmCrossLinkList(String name, int rowCount, Object[] encodedColumns)
IhmCrossLinkList(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getCompId1()	The component identifier for the first monomer partner in the cross link.
StrColumn	getCompId2()	The component identifier for the second monomer partner in the cross link.
IntColumn	getDatasetListId()	Identifier to the crosslinking dataset.
StrColumn	getEntityDescription1()	A text description of molecular entity 1.
StrColumn	getEntityDescription2()	A text description of molecular entity 2.
StrColumn	getEntityId1()	The entity identifier for the first monomer partner in the cross link This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.
StrColumn	getEntityId2()	The entity identifier for the second monomer partner in the cross link This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.
IntColumn	getGroupId()	An identifier for a set of ambiguous crosslink restraints.
IntColumn	getId()	A unique identifier for the cross link restraint.
StrColumn	getLinkerType()	The type of crosslinker used.
IntColumn	getSeqId1()	The sequence index for the first monomer partner in the cross link.
IntColumn	getSeqId2()	The sequence index for the second monomer partner in the cross link.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

IhmCrossLinkList

public IhmCrossLinkList(String name,
                        Map<String,Column> columns)

IhmCrossLinkList

public IhmCrossLinkList(String name,
                        int rowCount,
                        Object[] encodedColumns)

IhmCrossLinkList

public IhmCrossLinkList(String name)

Method Detail

getId

public IntColumn getId()

A unique identifier for the cross link restraint.

Returns:

IntColumn

getGroupId

public IntColumn getGroupId()

An identifier for a set of ambiguous crosslink restraints. Handles experimental uncertainties in the identities of crosslinked residues.

Returns:

IntColumn

getEntityDescription1

public StrColumn getEntityDescription1()

A text description of molecular entity 1.

Returns:

StrColumn

getEntityDescription2

public StrColumn getEntityDescription2()

A text description of molecular entity 2.

Returns:

StrColumn

getEntityId1

public StrColumn getEntityId1()

The entity identifier for the first monomer partner in the cross link This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getEntityId2

public StrColumn getEntityId2()

The entity identifier for the second monomer partner in the cross link This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getCompId1

public StrColumn getCompId1()

The component identifier for the first monomer partner in the cross link. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getCompId2

public StrColumn getCompId2()

The component identifier for the second monomer partner in the cross link. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.

Returns:

StrColumn

getSeqId1

public IntColumn getSeqId1()

The sequence index for the first monomer partner in the cross link. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getSeqId2

public IntColumn getSeqId2()

The sequence index for the second monomer partner in the cross link. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getLinkerType

public StrColumn getLinkerType()

The type of crosslinker used.

Returns:

StrColumn

getDatasetListId

public IntColumn getDatasetListId()

Identifier to the crosslinking dataset. This data item is a pointer to the _ihm_dataset_list.id in the IHM_DATASET_LIST category.

Returns:

IntColumn