Package org.rcsb.cif.model.generated

Class Ihm2demClassAverageRestraint

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class Ihm2demClassAverageRestraint
extends BaseCategory
    Data items in the IHM_2DEM_CLASS_AVERAGE_RESTRAINT category records the details of the 2DEM class averages used in the IHM modeling.

    • Constructor Detail

      • Ihm2demClassAverageRestraint

        public Ihm2demClassAverageRestraint​(String name,
                                    Map<String,​Column> columns)

      • Ihm2demClassAverageRestraint

        public Ihm2demClassAverageRestraint​(String name,
                                    int rowCount,
                                    Object[] encodedColumns)

      • Ihm2demClassAverageRestraint

        public Ihm2demClassAverageRestraint​(String name)

    • Method Detail

      • getId

        public IntColumn getId()
        A unique identifier for the 2dem class average.
        Returns:
        IntColumn

      • getDatasetListId

        public IntColumn getDatasetListId()
        Identifier to the 2dem class average dataset. This data item is a pointer to the _ihm_dataset_list.id in the IHM_DATASET_LIST category.
        Returns:
        IntColumn

      • getNumberRawMicrographs

        public IntColumn getNumberRawMicrographs()
        The number of raw micrographs used to obtain the class average.
        Returns:
        IntColumn

      • getPixelSizeWidth

        public FloatColumn getPixelSizeWidth()
        Pixel size width of the 2dem class average image. While fitting the model to the image, _ihm_2dem_class_average_restraint.pixel_size_width is used along with _ihm_2dem_class_average_restraint.pixel_size_height to scale the image.
        Returns:
        FloatColumn

      • getPixelSizeHeight

        public FloatColumn getPixelSizeHeight()
        Pixel size height of the 2dem class average image. While fitting the model to the image, _ihm_2dem_class_average_restraint.pixel_size_height is used along with _ihm_2dem_class_average_restraint.pixel_size_width to scale the image.
        Returns:
        FloatColumn

      • getImageResolution

        public FloatColumn getImageResolution()
        Resolution of the 2dem class average.
        Returns:
        FloatColumn

      • getImageSegmentFlag

        public StrColumn getImageSegmentFlag()
        A flag that indicates whether or not the 2DEM class average image is segmented i.e., whether the whole image is used or only a portion of it is used (by masking or by other means) as restraint in the modeling.
        Returns:
        StrColumn

      • getNumberOfProjections

        public IntColumn getNumberOfProjections()
        Number of 2D projections of the model used in the fitting.
        Returns:
        IntColumn

      • getStructAssemblyId

        public IntColumn getStructAssemblyId()
        An indicator to whether the whole assembly that is modeled is fit into the image or if only a subset of the structural assembly is fit into the image. This data item is a pointer to _ihm_struct_assembly.assembly_id in the IHM_STRUCT_ASSEMBLY category. The IHM_STRUCT_ASSEMBLY category provides the details regarding the different structural assemblies used in the modeling. The default value for this data item is "1" indicating that the entire assembly being modeled is fit into the EM data.
        Returns:
        IntColumn

      • getDetails

        public StrColumn getDetails()
        Details of how the 2DEM restraint is applied in the modeling algorithm.
        Returns:
        StrColumn