Package org.rcsb.cif.model.generated

Class GeomTorsion

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class GeomTorsion
extends BaseCategory
    Data items in the GEOM_TORSION category record details about torsion angles as calculated from the contents of the ATOM, CELL and SYMMETRY data. The vector direction _geom_torsion.atom_site_id_2 to _geom_torsion.atom_site_id_3 is the viewing direction, and the torsion angle is the angle of twist required to superimpose the projection of the vector between site 2 and site 1 onto the projection of the vector between site 3 and site 4. Clockwise torsions are positive, anticlockwise torsions are negative. Ref: Klyne, W. & Prelog, V. (1960). Experientia, 16, 521-523.

    • Constructor Detail

      • GeomTorsion

        public GeomTorsion​(String name,
                   int rowCount,
                   Object[] encodedColumns)

      • GeomTorsion

        public GeomTorsion​(String name)

    • Method Detail

      • getAtomSiteId1

        public StrColumn getAtomSiteId1()
        The identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelAltId1

        public StrColumn getAtomSiteLabelAltId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelAtomId1

        public StrColumn getAtomSiteLabelAtomId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelCompId1

        public StrColumn getAtomSiteLabelCompId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelSeqId1

        public IntColumn getAtomSiteLabelSeqId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getAtomSiteLabelAsymId1

        public StrColumn getAtomSiteLabelAsymId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteId2

        public StrColumn getAtomSiteId2()
        The identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelAltId2

        public StrColumn getAtomSiteLabelAltId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelAtomId2

        public StrColumn getAtomSiteLabelAtomId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelCompId2

        public StrColumn getAtomSiteLabelCompId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelSeqId2

        public IntColumn getAtomSiteLabelSeqId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getAtomSiteLabelAsymId2

        public StrColumn getAtomSiteLabelAsymId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteId3

        public StrColumn getAtomSiteId3()
        The identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelAltId3

        public StrColumn getAtomSiteLabelAltId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelAtomId3

        public StrColumn getAtomSiteLabelAtomId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelCompId3

        public StrColumn getAtomSiteLabelCompId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelSeqId3

        public IntColumn getAtomSiteLabelSeqId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getAtomSiteLabelAsymId3

        public StrColumn getAtomSiteLabelAsymId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteId4

        public StrColumn getAtomSiteId4()
        The identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelAltId4

        public StrColumn getAtomSiteLabelAltId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelAtomId4

        public StrColumn getAtomSiteLabelAtomId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelCompId4

        public StrColumn getAtomSiteLabelCompId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteLabelSeqId4

        public IntColumn getAtomSiteLabelSeqId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getAtomSiteLabelAsymId4

        public StrColumn getAtomSiteLabelAsymId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthAtomId1

        public StrColumn getAtomSiteAuthAtomId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthAsymId1

        public StrColumn getAtomSiteAuthAsymId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthCompId1

        public StrColumn getAtomSiteAuthCompId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthSeqId1

        public StrColumn getAtomSiteAuthSeqId1()
        An optional identifier of the first of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthAtomId2

        public StrColumn getAtomSiteAuthAtomId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthAsymId2

        public StrColumn getAtomSiteAuthAsymId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthCompId2

        public StrColumn getAtomSiteAuthCompId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthSeqId2

        public StrColumn getAtomSiteAuthSeqId2()
        An optional identifier of the second of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthAtomId3

        public StrColumn getAtomSiteAuthAtomId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthAsymId3

        public StrColumn getAtomSiteAuthAsymId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthCompId3

        public StrColumn getAtomSiteAuthCompId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthSeqId3

        public StrColumn getAtomSiteAuthSeqId3()
        An optional identifier of the third of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthAtomId4

        public StrColumn getAtomSiteAuthAtomId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthAsymId4

        public StrColumn getAtomSiteAuthAsymId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthCompId4

        public StrColumn getAtomSiteAuthCompId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getAtomSiteAuthSeqId4

        public StrColumn getAtomSiteAuthSeqId4()
        An optional identifier of the fourth of the four atom sites that define the torsion angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getPublFlag

        public StrColumn getPublFlag()
        This code signals whether the torsion angle is referred to in a publication or should be placed in a table of significant torsion angles.
        Returns:
        StrColumn

      • getSiteSymmetry1

        public StrColumn getSiteSymmetry1()
        The symmetry code of the first of the four atom sites that define the torsion angle.
        Returns:
        StrColumn

      • getSiteSymmetry2

        public StrColumn getSiteSymmetry2()
        The symmetry code of the second of the four atom sites that define the torsion angle.
        Returns:
        StrColumn

      • getSiteSymmetry3

        public StrColumn getSiteSymmetry3()
        The symmetry code of the third of the four atom sites that define the torsion angle.
        Returns:
        StrColumn

      • getSiteSymmetry4

        public StrColumn getSiteSymmetry4()
        The symmetry code of the fourth of the four atom sites that define the torsion angle.
        Returns:
        StrColumn

      • getValue

        public FloatColumn getValue()
        The value of the torsion angle in degrees.
        Returns:
        FloatColumn

      • getValueEsd

        public FloatColumn getValueEsd()
        The standard uncertainty (estimated standard deviation) of _geom_torsion.value.
        Returns:
        FloatColumn

      • getPdbxAtomSitePDBInsCode1

        public StrColumn getPdbxAtomSitePDBInsCode1()
        Pointer to _atom_site.pdbx_PDB_ins_code.
        Returns:
        StrColumn

      • getPdbxAtomSitePDBInsCode2

        public StrColumn getPdbxAtomSitePDBInsCode2()
        Pointer to _atom_site.pdbx_PDB_ins_code.
        Returns:
        StrColumn

      • getPdbxAtomSitePDBInsCode3

        public StrColumn getPdbxAtomSitePDBInsCode3()
        Pointer to _atom_site.pdbx_PDB_ins_code.
        Returns:
        StrColumn

      • getPdbxAtomSitePDBInsCode4

        public StrColumn getPdbxAtomSitePDBInsCode4()
        Pointer to _atom_site.pdbx_PDB_ins_code.
        Returns:
        StrColumn

      • getPdbxPDBModelNum

        public IntColumn getPdbxPDBModelNum()
        Pointer to _atom_site.pdbx_PDB_model_num
        Returns:
        IntColumn