java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.GeomHbond

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class GeomHbond
extends BaseCategory
```
Data items in the GEOM_HBOND category record details about hydrogen bonds as calculated from the contents of the ATOM, CELL and SYMMETRY data.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`GeomHbond(String name)`
`GeomHbond(String name, int rowCount, Object[] encodedColumns)`
`GeomHbond(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`FloatColumn`	`getAngleDHA()`	The angle in degrees defined by the donor-, hydrogen- and acceptor-atom sites in a hydrogen bond.
`FloatColumn`	`getAngleDHAEsd()`	The standard uncertainty (estimated standard deviation) of _geom_hbond.angle_DHA.
`StrColumn`	`getAtomSiteAuthAsymIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthAsymIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthAsymIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthAtomIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthAtomIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthAtomIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthCompIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthCompIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthCompIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthSeqIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthSeqIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteAuthSeqIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteIdA()`	The identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteIdD()`	The identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteIdH()`	The identifier of the hydrogen-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAltIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAltIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAltIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAsymIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAsymIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAsymIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAtomIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAtomIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelAtomIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelCompIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelCompIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getAtomSiteLabelCompIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`IntColumn`	`getAtomSiteLabelSeqIdA()`	An optional identifier of the acceptor-atom site that defines the hydrogen bond.
`IntColumn`	`getAtomSiteLabelSeqIdD()`	An optional identifier of the donor-atom site that defines the hydrogen bond.
`IntColumn`	`getAtomSiteLabelSeqIdH()`	An optional identifier of the hydrogen-atom site that defines the hydrogen bond.
`FloatColumn`	`getDistDA()`	The distance in angstroms between the donor- and acceptor-atom sites in a hydrogen bond.
`FloatColumn`	`getDistDAEsd()`	The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_DA.
`FloatColumn`	`getDistDH()`	The distance in angstroms between the donor- and hydrogen-atom sites in a hydrogen bond.
`FloatColumn`	`getDistDHEsd()`	The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_DH.
`FloatColumn`	`getDistHA()`	The distance in angstroms between the hydrogen- and acceptor- atom sites in a hydrogen bond.
`FloatColumn`	`getDistHAEsd()`	The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_HA.
`StrColumn`	`getPublFlag()`	This code signals whether the hydrogen-bond information is referred to in a publication or should be placed in a table of significant hydrogen-bond geometry.
`StrColumn`	`getSiteSymmetryA()`	The symmetry code of the acceptor-atom site that defines the hydrogen bond.
`StrColumn`	`getSiteSymmetryD()`	The symmetry code of the donor-atom site that defines the hydrogen bond.
`StrColumn`	`getSiteSymmetryH()`	The symmetry code of the hydrogen-atom site that defines the hydrogen bond.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - GeomHbond
```
public GeomHbond(String name,
                 Map<String,Column> columns)
```
  - GeomHbond
```
public GeomHbond(String name,
                 int rowCount,
                 Object[] encodedColumns)
```
  - GeomHbond
```
public GeomHbond(String name)
```
- Method Detail
  - getAngleDHA
```
public FloatColumn getAngleDHA()
```
    The angle in degrees defined by the donor-, hydrogen- and acceptor-atom sites in a hydrogen bond.
    
    Returns:
    
    FloatColumn
  - getAngleDHAEsd
```
public FloatColumn getAngleDHAEsd()
```
    The standard uncertainty (estimated standard deviation) of _geom_hbond.angle_DHA.
    
    Returns:
    
    FloatColumn
  - getAtomSiteIdA
```
public StrColumn getAtomSiteIdA()
```
    The identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAltIdA
```
public StrColumn getAtomSiteLabelAltIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAsymIdA
```
public StrColumn getAtomSiteLabelAsymIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAtomIdA
```
public StrColumn getAtomSiteLabelAtomIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelCompIdA
```
public StrColumn getAtomSiteLabelCompIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelSeqIdA
```
public IntColumn getAtomSiteLabelSeqIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAtomSiteIdD
```
public StrColumn getAtomSiteIdD()
```
    The identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAltIdD
```
public StrColumn getAtomSiteLabelAltIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAsymIdD
```
public StrColumn getAtomSiteLabelAsymIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAtomIdD
```
public StrColumn getAtomSiteLabelAtomIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelCompIdD
```
public StrColumn getAtomSiteLabelCompIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelSeqIdD
```
public IntColumn getAtomSiteLabelSeqIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAtomSiteIdH
```
public StrColumn getAtomSiteIdH()
```
    The identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAltIdH
```
public StrColumn getAtomSiteLabelAltIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAsymIdH
```
public StrColumn getAtomSiteLabelAsymIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAtomIdH
```
public StrColumn getAtomSiteLabelAtomIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelCompIdH
```
public StrColumn getAtomSiteLabelCompIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelSeqIdH
```
public IntColumn getAtomSiteLabelSeqIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAtomSiteAuthAsymIdA
```
public StrColumn getAtomSiteAuthAsymIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAtomIdA
```
public StrColumn getAtomSiteAuthAtomIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthCompIdA
```
public StrColumn getAtomSiteAuthCompIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthSeqIdA
```
public StrColumn getAtomSiteAuthSeqIdA()
```
    An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAsymIdD
```
public StrColumn getAtomSiteAuthAsymIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAtomIdD
```
public StrColumn getAtomSiteAuthAtomIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthCompIdD
```
public StrColumn getAtomSiteAuthCompIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthSeqIdD
```
public StrColumn getAtomSiteAuthSeqIdD()
```
    An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAsymIdH
```
public StrColumn getAtomSiteAuthAsymIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAtomIdH
```
public StrColumn getAtomSiteAuthAtomIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthCompIdH
```
public StrColumn getAtomSiteAuthCompIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthSeqIdH
```
public StrColumn getAtomSiteAuthSeqIdH()
```
    An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getDistDA
```
public FloatColumn getDistDA()
```
    The distance in angstroms between the donor- and acceptor-atom sites in a hydrogen bond.
    
    Returns:
    
    FloatColumn
  - getDistDAEsd
```
public FloatColumn getDistDAEsd()
```
    The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_DA.
    
    Returns:
    
    FloatColumn
  - getDistDH
```
public FloatColumn getDistDH()
```
    The distance in angstroms between the donor- and hydrogen-atom sites in a hydrogen bond.
    
    Returns:
    
    FloatColumn
  - getDistDHEsd
```
public FloatColumn getDistDHEsd()
```
    The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_DH.
    
    Returns:
    
    FloatColumn
  - getDistHA
```
public FloatColumn getDistHA()
```
    The distance in angstroms between the hydrogen- and acceptor- atom sites in a hydrogen bond.
    
    Returns:
    
    FloatColumn
  - getDistHAEsd
```
public FloatColumn getDistHAEsd()
```
    The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_HA.
    
    Returns:
    
    FloatColumn
  - getPublFlag
```
public StrColumn getPublFlag()
```
    This code signals whether the hydrogen-bond information is referred to in a publication or should be placed in a table of significant hydrogen-bond geometry.
    
    Returns:
    
    StrColumn
  - getSiteSymmetryA
```
public StrColumn getSiteSymmetryA()
```
    The symmetry code of the acceptor-atom site that defines the hydrogen bond.
    
    Returns:
    
    StrColumn
  - getSiteSymmetryD
```
public StrColumn getSiteSymmetryD()
```
    The symmetry code of the donor-atom site that defines the hydrogen bond.
    
    Returns:
    
    StrColumn
  - getSiteSymmetryH
```
public StrColumn getSiteSymmetryH()
```
    The symmetry code of the hydrogen-atom site that defines the hydrogen bond.
    
    Returns:
    
    StrColumn

Class GeomHbond

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

GeomHbond

GeomHbond

GeomHbond

Method Detail

getAngleDHA

getAngleDHAEsd

getAtomSiteIdA

getAtomSiteLabelAltIdA

getAtomSiteLabelAsymIdA

getAtomSiteLabelAtomIdA

getAtomSiteLabelCompIdA

getAtomSiteLabelSeqIdA

getAtomSiteIdD

getAtomSiteLabelAltIdD

getAtomSiteLabelAsymIdD

getAtomSiteLabelAtomIdD

getAtomSiteLabelCompIdD

getAtomSiteLabelSeqIdD

getAtomSiteIdH

getAtomSiteLabelAltIdH

getAtomSiteLabelAsymIdH

getAtomSiteLabelAtomIdH

getAtomSiteLabelCompIdH

getAtomSiteLabelSeqIdH

getAtomSiteAuthAsymIdA

getAtomSiteAuthAtomIdA

getAtomSiteAuthCompIdA

getAtomSiteAuthSeqIdA

getAtomSiteAuthAsymIdD

getAtomSiteAuthAtomIdD

getAtomSiteAuthCompIdD

getAtomSiteAuthSeqIdD

getAtomSiteAuthAsymIdH

getAtomSiteAuthAtomIdH

getAtomSiteAuthCompIdH

getAtomSiteAuthSeqIdH

getDistDA

getDistDAEsd

getDistDH

getDistDHEsd

getDistHA

getDistHAEsd

getPublFlag

getSiteSymmetryA

getSiteSymmetryD

getSiteSymmetryH