java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.GeomBond

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class GeomBond
extends BaseCategory
```
Data items in the GEOM_BOND category record details about the bond lengths as calculated from the contents of the ATOM, CELL and SYMMETRY data.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`GeomBond(String name)`
`GeomBond(String name, int rowCount, Object[] encodedColumns)`
`GeomBond(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StrColumn`	`getAtomSiteAuthAsymId1()`	An optional identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteAuthAsymId2()`	An optional identifier of the second of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteAuthAtomId1()`	An optional identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteAuthAtomId2()`	An optional identifier of the second of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteAuthCompId1()`	An optional identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteAuthCompId2()`	An optional identifier of the second of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteAuthSeqId1()`	An optional identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteAuthSeqId2()`	An optional identifier of the second of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteId1()`	The identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteId2()`	The identifier of the second of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteLabelAltId1()`	An optional identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteLabelAltId2()`	An optional identifier of the second of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteLabelAsymId1()`	An optional identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteLabelAsymId2()`	An optional identifier of the second of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteLabelAtomId1()`	An optional identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteLabelAtomId2()`	An optional identifier of the second of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteLabelCompId1()`	An optional identifier of the first of the two atom sites that define the bond.
`StrColumn`	`getAtomSiteLabelCompId2()`	An optional identifier of the second of the two atom sites that define the bond.
`IntColumn`	`getAtomSiteLabelSeqId1()`	An optional identifier of the first of the two atom sites that define the bond.
`IntColumn`	`getAtomSiteLabelSeqId2()`	An optional identifier of the second of the two atom sites that define the bond.
`FloatColumn`	`getDist()`	The intramolecular bond distance in angstroms.
`FloatColumn`	`getDistEsd()`	The standard uncertainty (estimated standard deviation) of _geom_bond.dist.
`StrColumn`	`getPdbxAtomSitePDBInsCode1()`	Pointer to _atom_site.pdbx_PDB_ins_code.
`StrColumn`	`getPdbxAtomSitePDBInsCode2()`	Pointer to _atom_site.pdbx_PDB_ins_code.
`IntColumn`	`getPdbxPDBModelNum()`	Pointer to _atom_site.pdbx_PDB_model_num
`StrColumn`	`getPublFlag()`	This code signals whether the bond distance is referred to in a publication or should be placed in a list of significant bond distances.
`StrColumn`	`getSiteSymmetry1()`	The symmetry code of the first of the two atom sites that define the bond.
`StrColumn`	`getSiteSymmetry2()`	The symmetry code of the second of the two atom sites that define the bond.
`IntColumn`	`getValence()`	The bond valence calculated from _geom_bond.dist.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - GeomBond
```
public GeomBond(String name,
                Map<String,Column> columns)
```
  - GeomBond
```
public GeomBond(String name,
                int rowCount,
                Object[] encodedColumns)
```
  - GeomBond
```
public GeomBond(String name)
```
- Method Detail
  - getAtomSiteId1
```
public StrColumn getAtomSiteId1()
```
    The identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAltId1
```
public StrColumn getAtomSiteLabelAltId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAtomId1
```
public StrColumn getAtomSiteLabelAtomId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelCompId1
```
public StrColumn getAtomSiteLabelCompId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelSeqId1
```
public IntColumn getAtomSiteLabelSeqId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAtomSiteLabelAsymId1
```
public StrColumn getAtomSiteLabelAsymId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteId2
```
public StrColumn getAtomSiteId2()
```
    The identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAltId2
```
public StrColumn getAtomSiteLabelAltId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAtomId2
```
public StrColumn getAtomSiteLabelAtomId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelCompId2
```
public StrColumn getAtomSiteLabelCompId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelSeqId2
```
public IntColumn getAtomSiteLabelSeqId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAtomSiteLabelAsymId2
```
public StrColumn getAtomSiteLabelAsymId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAtomId1
```
public StrColumn getAtomSiteAuthAtomId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAsymId1
```
public StrColumn getAtomSiteAuthAsymId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthCompId1
```
public StrColumn getAtomSiteAuthCompId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthSeqId1
```
public StrColumn getAtomSiteAuthSeqId1()
```
    An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAtomId2
```
public StrColumn getAtomSiteAuthAtomId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAsymId2
```
public StrColumn getAtomSiteAuthAsymId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthCompId2
```
public StrColumn getAtomSiteAuthCompId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthSeqId2
```
public StrColumn getAtomSiteAuthSeqId2()
```
    An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getDist
```
public FloatColumn getDist()
```
    The intramolecular bond distance in angstroms.
    
    Returns:
    
    FloatColumn
  - getDistEsd
```
public FloatColumn getDistEsd()
```
    The standard uncertainty (estimated standard deviation) of _geom_bond.dist.
    
    Returns:
    
    FloatColumn
  - getPublFlag
```
public StrColumn getPublFlag()
```
    This code signals whether the bond distance is referred to in a publication or should be placed in a list of significant bond distances.
    
    Returns:
    
    StrColumn
  - getSiteSymmetry1
```
public StrColumn getSiteSymmetry1()
```
    The symmetry code of the first of the two atom sites that define the bond.
    
    Returns:
    
    StrColumn
  - getSiteSymmetry2
```
public StrColumn getSiteSymmetry2()
```
    The symmetry code of the second of the two atom sites that define the bond.
    
    Returns:
    
    StrColumn
  - getValence
```
public IntColumn getValence()
```
    The bond valence calculated from _geom_bond.dist.
    
    Returns:
    
    IntColumn
  - getPdbxAtomSitePDBInsCode1
```
public StrColumn getPdbxAtomSitePDBInsCode1()
```
    Pointer to _atom_site.pdbx_PDB_ins_code.
    
    Returns:
    
    StrColumn
  - getPdbxAtomSitePDBInsCode2
```
public StrColumn getPdbxAtomSitePDBInsCode2()
```
    Pointer to _atom_site.pdbx_PDB_ins_code.
    
    Returns:
    
    StrColumn
  - getPdbxPDBModelNum
```
public IntColumn getPdbxPDBModelNum()
```
    Pointer to _atom_site.pdbx_PDB_model_num
    
    Returns:
    
    IntColumn

Class GeomBond

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

GeomBond

GeomBond

GeomBond

Method Detail

getAtomSiteId1

getAtomSiteLabelAltId1

getAtomSiteLabelAtomId1

getAtomSiteLabelCompId1

getAtomSiteLabelSeqId1

getAtomSiteLabelAsymId1

getAtomSiteId2

getAtomSiteLabelAltId2

getAtomSiteLabelAtomId2

getAtomSiteLabelCompId2

getAtomSiteLabelSeqId2

getAtomSiteLabelAsymId2

getAtomSiteAuthAtomId1

getAtomSiteAuthAsymId1

getAtomSiteAuthCompId1

getAtomSiteAuthSeqId1

getAtomSiteAuthAtomId2

getAtomSiteAuthAsymId2

getAtomSiteAuthCompId2

getAtomSiteAuthSeqId2

getDist

getDistEsd

getPublFlag

getSiteSymmetry1

getSiteSymmetry2

getValence

getPdbxAtomSitePDBInsCode1

getPdbxAtomSitePDBInsCode2

getPdbxPDBModelNum