Package org.rcsb.cif.model.generated

Class EntitySrcNat

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EntitySrcNat
extends BaseCategory
    Data items in the ENTITY_SRC_NAT category record details of the source from which the entity was obtained in cases where the entity was isolated directly from a natural tissue.

    • Constructor Detail

      • EntitySrcNat

        public EntitySrcNat​(String name,
                    int rowCount,
                    Object[] encodedColumns)

      • EntitySrcNat

        public EntitySrcNat​(String name)

    • Method Detail

      • getCommonName

        public StrColumn getCommonName()
        The common name of the organism from which the entity was isolated.
        Returns:
        StrColumn

      • getDetails

        public StrColumn getDetails()
        A description of special aspects of the organism from which the entity was isolated.
        Returns:
        StrColumn

      • getEntityId

        public StrColumn getEntityId()
        This data item is a pointer to _entity.id in the ENTITY category.
        Returns:
        StrColumn

      • getGenus

        public StrColumn getGenus()
        The genus of the organism from which the entity was isolated.
        Returns:
        StrColumn

      • getSpecies

        public StrColumn getSpecies()
        The species of the organism from which the entity was isolated.
        Returns:
        StrColumn

      • getStrain

        public StrColumn getStrain()
        The strain of the organism from which the entity was isolated.
        Returns:
        StrColumn

      • getTissue

        public StrColumn getTissue()
        The tissue of the organism from which the entity was isolated.
        Returns:
        StrColumn

      • getTissueFraction

        public StrColumn getTissueFraction()
        The subcellular fraction of the tissue of the organism from which the entity was isolated.
        Returns:
        StrColumn

      • getPdbxOrganismScientific

        public StrColumn getPdbxOrganismScientific()
        Scientific name of the organism of the natural source.
        Returns:
        StrColumn

      • getPdbxSecretion

        public StrColumn getPdbxSecretion()
        Identifies the secretion from which the molecule was isolated.
        Returns:
        StrColumn

      • getPdbxFragment

        public StrColumn getPdbxFragment()
        A domain or fragment of the molecule.
        Returns:
        StrColumn

      • getPdbxVariant

        public StrColumn getPdbxVariant()
        Identifies the variant.
        Returns:
        StrColumn

      • getPdbxCellLine

        public StrColumn getPdbxCellLine()
        The specific line of cells.
        Returns:
        StrColumn

      • getPdbxAtcc

        public StrColumn getPdbxAtcc()
        Americal Tissue Culture Collection number.
        Returns:
        StrColumn

      • getPdbxCellularLocation

        public StrColumn getPdbxCellularLocation()
        Identifies the location inside (or outside) the cell.
        Returns:
        StrColumn

      • getPdbxOrgan

        public StrColumn getPdbxOrgan()
        Organized group of tissues that carries on a specialized function.
        Returns:
        StrColumn

      • getPdbxOrganelle

        public StrColumn getPdbxOrganelle()
        Organized structure within cell.
        Returns:
        StrColumn

      • getPdbxCell

        public StrColumn getPdbxCell()
        A particular cell type.
        Returns:
        StrColumn

      • getPdbxPlasmidName

        public StrColumn getPdbxPlasmidName()
        The plasmid containing the gene.
        Returns:
        StrColumn

      • getPdbxPlasmidDetails

        public StrColumn getPdbxPlasmidDetails()
        Details about the plasmid.
        Returns:
        StrColumn

      • getPdbxNcbiTaxonomyId

        public StrColumn getPdbxNcbiTaxonomyId()
        NCBI Taxonomy identifier for the source organism. Reference: Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA (2000). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2000 Jan 1;28(1):10-4 Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.
        Returns:
        StrColumn

      • getPdbxSrcId

        public IntColumn getPdbxSrcId()
        This data item is an ordinal identifier for entity_src_nat data records.
        Returns:
        IntColumn

      • getPdbxAltSourceFlag

        public StrColumn getPdbxAltSourceFlag()
        This data item identifies cases in which an alternative source modeled.
        Returns:
        StrColumn

      • getPdbxBegSeqNum

        public IntColumn getPdbxBegSeqNum()
        The beginning polymer sequence position for the polymer section corresponding to this source. A reference to the sequence position in the entity_poly category.
        Returns:
        IntColumn

      • getPdbxEndSeqNum

        public IntColumn getPdbxEndSeqNum()
        The ending polymer sequence position for the polymer section corresponding to this source. A reference to the sequence position in the entity_poly category.
        Returns:
        IntColumn

      • getPdbxCultureCollection

        public StrColumn getPdbxCultureCollection()
        Culture Collection identifier.
        Returns:
        StrColumn