Package org.rcsb.cif.model.generated

Class EntityPolySeq

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EntityPolySeq

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EntityPolySeq
extends BaseCategory

Data items in the ENTITY_POLY_SEQ category specify the sequence of monomers in a polymer. Allowance is made for the possibility of microheterogeneity in a sample by allowing a given sequence number to be correlated with more than one monomer ID. The corresponding ATOM_SITE entries should reflect this heterogeneity.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EntityPolySeq(String name)
EntityPolySeq(String name, int rowCount, Object[] encodedColumns)
EntityPolySeq(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getEntityId()	This data item is a pointer to _entity.id in the ENTITY category.
StrColumn	getHetero()	A flag to indicate whether this monomer in the polymer is heterogeneous in sequence.
StrColumn	getMonId()	This data item is a pointer to _chem_comp.id in the CHEM_COMP category.
IntColumn	getNum()	The value of _entity_poly_seq.num must uniquely and sequentially identify a record in the ENTITY_POLY_SEQ list.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EntityPolySeq

public EntityPolySeq(String name,
                     Map<String,Column> columns)

EntityPolySeq

public EntityPolySeq(String name,
                     int rowCount,
                     Object[] encodedColumns)

EntityPolySeq

public EntityPolySeq(String name)

Method Detail

getEntityId

public StrColumn getEntityId()

This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getHetero

public StrColumn getHetero()

A flag to indicate whether this monomer in the polymer is heterogeneous in sequence.

Returns:

StrColumn

getMonId

public StrColumn getMonId()

This data item is a pointer to _chem_comp.id in the CHEM_COMP category.

Returns:

StrColumn

getNum

public IntColumn getNum()

The value of _entity_poly_seq.num must uniquely and sequentially identify a record in the ENTITY_POLY_SEQ list. Note that this item must be a number and that the sequence numbers must progress in increasing numerical order.

Returns:

IntColumn