Package org.rcsb.cif.model.generated

Class EmVitrification

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EmVitrification

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EmVitrification
extends BaseCategory

Data items in the EM_VITRIFICATION category record details about the method and cryogen used in rapid freezing of the sample on the grid prior to its insertion in the electron microscope

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EmVitrification(String name)
EmVitrification(String name, int rowCount, Object[] encodedColumns)
EmVitrification(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
FloatColumn	getChamberTemperature()	The temperature (in degrees Kelvin) of the sample just prior to vitrification.
StrColumn	getCitationId()	This data item is a pointer to _citation.id in the CITATION category.
StrColumn	getCryogenName()	This is the name of the cryogen.
StrColumn	getDetails()	Any additional details relating to vitrification.
StrColumn	getEntryId()	This data item is a pointer to _entry.id in the ENTRY category.
FloatColumn	getHumidity()	The humidity (%) in the vicinity of the vitrification process.
StrColumn	getId()	The value of _em_vitrification.id must uniquely identify the vitrification procedure.
StrColumn	getInstrument()	The type of instrument used in the vitrification process.
StrColumn	getMethod()	The procedure for vitrification.
StrColumn	getSamplePreparationId()	This data item is a pointer to _em_sample_preparation.id in the EM_SAMPLE_PREPARATION category.
StrColumn	getSpecimenId()	This data item is a pointer to _em_specimen.id
FloatColumn	getTemp()	The vitrification temperature (in degrees Kelvin), e.g., temperature of the plunge instrument cryogen bath.
StrColumn	getTimeResolvedState()	The length of time after an event effecting the sample that vitrification was induced and a description of the event.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EmVitrification

public EmVitrification(String name,
                       Map<String,Column> columns)

EmVitrification

public EmVitrification(String name,
                       int rowCount,
                       Object[] encodedColumns)

EmVitrification

public EmVitrification(String name)

Method Detail

getEntryId

public StrColumn getEntryId()

This data item is a pointer to _entry.id in the ENTRY category.

Returns:

StrColumn

getId

public StrColumn getId()

The value of _em_vitrification.id must uniquely identify the vitrification procedure.

Returns:

StrColumn

getSamplePreparationId

public StrColumn getSamplePreparationId()

This data item is a pointer to _em_sample_preparation.id in the EM_SAMPLE_PREPARATION category.

Returns:

StrColumn

getSpecimenId

public StrColumn getSpecimenId()

This data item is a pointer to _em_specimen.id

Returns:

StrColumn

getCryogenName

public StrColumn getCryogenName()

This is the name of the cryogen.

Returns:

StrColumn

getHumidity

public FloatColumn getHumidity()

The humidity (%) in the vicinity of the vitrification process.

Returns:

FloatColumn

getTemp

public FloatColumn getTemp()

The vitrification temperature (in degrees Kelvin), e.g., temperature of the plunge instrument cryogen bath.

Returns:

FloatColumn

getChamberTemperature

public FloatColumn getChamberTemperature()

The temperature (in degrees Kelvin) of the sample just prior to vitrification.

Returns:

FloatColumn

getInstrument

public StrColumn getInstrument()

The type of instrument used in the vitrification process.

Returns:

StrColumn

getMethod

public StrColumn getMethod()

The procedure for vitrification.

Returns:

StrColumn

getTimeResolvedState

public StrColumn getTimeResolvedState()

The length of time after an event effecting the sample that vitrification was induced and a description of the event.

Returns:

StrColumn

getCitationId

public StrColumn getCitationId()

This data item is a pointer to _citation.id in the CITATION category.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

Any additional details relating to vitrification.

Returns:

StrColumn