Package org.rcsb.cif.model.generated

Class EmVirusEntity

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EmVirusEntity

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EmVirusEntity
extends BaseCategory

Data items in the EM_VIRUS_ENTITY category record details of the icosahedral virus.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EmVirusEntity(String name)
EmVirusEntity(String name, int rowCount, Object[] encodedColumns)
EmVirusEntity(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDetails()	Additional details about this virus entity
StrColumn	getEmpty()	Flag to indicate if the virus is empty or not.
StrColumn	getEntityAssemblyId()	This data item is a pointer to _em_virus_entity.id in the ENTITY_ASSEMBLY category.
StrColumn	getEnveloped()	Flag to indicate if the virus is enveloped or not.
StrColumn	getIctvdbId()	The International Committee on Taxonomy of Viruses (ICTV) Taxon Identifier is the Virus Code used throughout the ICTV database (ICTVdb).
StrColumn	getId()	Is the unique identifier for VIRUS_ENTITY category.
StrColumn	getVirusHostCategory()	The host category description for the virus.
StrColumn	getVirusHostGrowthCell()	The host cell from which the virus was isolated.
StrColumn	getVirusHostSpecies()	The host species from which the virus was isolated.
StrColumn	getVirusIsolate()	The isolate from which the virus was obtained.
StrColumn	getVirusType()	The type of virus.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EmVirusEntity

public EmVirusEntity(String name,
                     Map<String,Column> columns)

EmVirusEntity

public EmVirusEntity(String name,
                     int rowCount,
                     Object[] encodedColumns)

EmVirusEntity

public EmVirusEntity(String name)

Method Detail

getId

public StrColumn getId()

Is the unique identifier for VIRUS_ENTITY category.

Returns:

StrColumn

getVirusHostCategory

public StrColumn getVirusHostCategory()

The host category description for the virus.

Returns:

StrColumn

getVirusHostSpecies

public StrColumn getVirusHostSpecies()

The host species from which the virus was isolated.

Returns:

StrColumn

getVirusHostGrowthCell

public StrColumn getVirusHostGrowthCell()

The host cell from which the virus was isolated.

Returns:

StrColumn

getVirusType

public StrColumn getVirusType()

The type of virus.

Returns:

StrColumn

getVirusIsolate

public StrColumn getVirusIsolate()

The isolate from which the virus was obtained.

Returns:

StrColumn

getIctvdbId

public StrColumn getIctvdbId()

The International Committee on Taxonomy of Viruses (ICTV) Taxon Identifier is the Virus Code used throughout the ICTV database (ICTVdb). The ICTVdb id is the appropriate identifier used by the International Committee on Taxonomy of Viruses Resource. Reference: Virus Taxonomy, Academic Press (1999). ISBN:0123702003. NOTE: ICTV no longer maintains ids; maintained for legacy only.

Returns:

StrColumn

getEntityAssemblyId

public StrColumn getEntityAssemblyId()

This data item is a pointer to _em_virus_entity.id in the ENTITY_ASSEMBLY category.

Returns:

StrColumn

getEnveloped

public StrColumn getEnveloped()

Flag to indicate if the virus is enveloped or not.

Returns:

StrColumn

getEmpty

public StrColumn getEmpty()

Flag to indicate if the virus is empty or not.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

Additional details about this virus entity

Returns:

StrColumn