Package org.rcsb.cif.model.generated

Class EmStartModel

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EmStartModel

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EmStartModel
extends BaseCategory

The startup model employed to begin refinement of the parameters for a 3DEM reconstruction

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EmStartModel(String name)
EmStartModel(String name, int rowCount, Object[] encodedColumns)
EmStartModel(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDetails()	Any additional details about generating the startup model
StrColumn	getEmdbId()	EMDB id of the map used as the startup model
StrColumn	getId()	Primary key
StrColumn	getImageProcessingId()	Foreign key to the EM_IMAGE_PROCESSING category
StrColumn	getInsilicoModel()	Description of the "in silico" model used to generate the startup model
FloatColumn	getOrthogonalTiltAngle1()	Tilt angle for the 1st image set of the orthogonal tilt pairs
FloatColumn	getOrthogonalTiltAngle2()	Tilt angle for the 2nd image set of the orthogonal tilt pairs
IntColumn	getOrthogonalTiltNumImages()	number of images used to generate the orthogonal tilt startup model
StrColumn	getOther()	Description of other method/source used to generate the startup model
StrColumn	getPdbId()	PDB id of the model coordinates used to generate the startup model
FloatColumn	getRandomConicalTiltAngle()	Angular difference between the conical tilt images used to generate the startup model
IntColumn	getRandomConicalTiltNumImages()	number of images used to generate the random conical tilt startup model
StrColumn	getType()	Type of startup model (map density) used to initiate the reconstruction

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EmStartModel

public EmStartModel(String name,
                    Map<String,Column> columns)

EmStartModel

public EmStartModel(String name,
                    int rowCount,
                    Object[] encodedColumns)

EmStartModel

public EmStartModel(String name)

Method Detail

getDetails

public StrColumn getDetails()

Any additional details about generating the startup model

Returns:

StrColumn

getEmdbId

public StrColumn getEmdbId()

EMDB id of the map used as the startup model

Returns:

StrColumn

getId

public StrColumn getId()

Primary key

Returns:

StrColumn

getImageProcessingId

public StrColumn getImageProcessingId()

Foreign key to the EM_IMAGE_PROCESSING category

Returns:

StrColumn

getInsilicoModel

public StrColumn getInsilicoModel()

Description of the "in silico" model used to generate the startup model

Returns:

StrColumn

getOrthogonalTiltAngle1

public FloatColumn getOrthogonalTiltAngle1()

Tilt angle for the 1st image set of the orthogonal tilt pairs

Returns:

FloatColumn

getOrthogonalTiltAngle2

public FloatColumn getOrthogonalTiltAngle2()

Tilt angle for the 2nd image set of the orthogonal tilt pairs

Returns:

FloatColumn

getOrthogonalTiltNumImages

public IntColumn getOrthogonalTiltNumImages()

number of images used to generate the orthogonal tilt startup model

Returns:

IntColumn

getOther

public StrColumn getOther()

Description of other method/source used to generate the startup model

Returns:

StrColumn

getPdbId

public StrColumn getPdbId()

PDB id of the model coordinates used to generate the startup model

Returns:

StrColumn

getRandomConicalTiltAngle

public FloatColumn getRandomConicalTiltAngle()

Angular difference between the conical tilt images used to generate the startup model

Returns:

FloatColumn

getRandomConicalTiltNumImages

public IntColumn getRandomConicalTiltNumImages()

number of images used to generate the random conical tilt startup model

Returns:

IntColumn

getType

public StrColumn getType()

Type of startup model (map density) used to initiate the reconstruction

Returns:

StrColumn