Package org.rcsb.cif.model.generated

Class EmSpecimen

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EmSpecimen

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EmSpecimen
extends BaseCategory

Data items in the EMD_SPECIMEN category record details about specimens prepared for imaging by electron microscopy.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EmSpecimen(String name)
EmSpecimen(String name, int rowCount, Object[] encodedColumns)
EmSpecimen(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
FloatColumn	getConcentration()	The concentration (in milligrams per milliliter, mg/ml) of the complex in the sample.
StrColumn	getDetails()	A description of any additional details of the specimen preparation.
StrColumn	getEmbeddingApplied()	'YES' indicates that the specimen has been embedded.
StrColumn	getExperimentId()	Pointer to _em_experiment.id.
StrColumn	getId()	The item _em_specimen.id uniquely identifies a specimen along with its preparation methods.
StrColumn	getShadowingApplied()	'YES' indicates that the specimen has been shadowed.
StrColumn	getStainingApplied()	'YES' indicates that the specimen has been stained.
StrColumn	getVitrificationApplied()	'YES' indicates that the specimen was vitrified by cryopreservation.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EmSpecimen

public EmSpecimen(String name,
                  Map<String,Column> columns)

EmSpecimen

public EmSpecimen(String name,
                  int rowCount,
                  Object[] encodedColumns)

EmSpecimen

public EmSpecimen(String name)

Method Detail

getConcentration

public FloatColumn getConcentration()

The concentration (in milligrams per milliliter, mg/ml) of the complex in the sample.

Returns:

FloatColumn

getDetails

public StrColumn getDetails()

A description of any additional details of the specimen preparation.

Returns:

StrColumn

getEmbeddingApplied

public StrColumn getEmbeddingApplied()

'YES' indicates that the specimen has been embedded.

Returns:

StrColumn

getExperimentId

public StrColumn getExperimentId()

Pointer to _em_experiment.id.

Returns:

StrColumn

getId

public StrColumn getId()

The item _em_specimen.id uniquely identifies a specimen along with its preparation methods.

Returns:

StrColumn

getShadowingApplied

public StrColumn getShadowingApplied()

'YES' indicates that the specimen has been shadowed.

Returns:

StrColumn

getStainingApplied

public StrColumn getStainingApplied()

'YES' indicates that the specimen has been stained.

Returns:

StrColumn

getVitrificationApplied

public StrColumn getVitrificationApplied()

'YES' indicates that the specimen was vitrified by cryopreservation.

Returns:

StrColumn