Package org.rcsb.cif.model.generated
Class EmImaging
- java.lang.Object
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- org.rcsb.cif.model.BaseCategory
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- org.rcsb.cif.model.generated.EmImaging
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- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class EmImaging extends BaseCategory
Data items in the EM_IMAGING category record details about the parameters used in imaging the sample in the electron microscope.
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Field Summary
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Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description IntColumngetAcceleratingVoltage()A value of accelerating voltage (in kV) used for imaging.StrColumngetAlignmentProcedure()microscope alignment procedureStrColumngetAstigmatism()astigmatismFloatColumngetC2ApertureDiameter()The open diameter of the c2 condenser lens, in microns.FloatColumngetCalibratedDefocusMax()The maximum defocus value of the objective lens (in nanometers) used to obtain the recorded images.FloatColumngetCalibratedDefocusMin()The minimum defocus value of the objective lens (in nanometers) used to obtain the recorded images.IntColumngetCalibratedMagnification()The magnification value obtained for a known standard just prior to, during or just after the imaging experiment.StrColumngetCitationId()This data item is a pointer to _citation.id in the CITATION category.StrColumngetCryogen()Cryogen type used to maintain the specimen stage temperature during imaging in the microscope.StrColumngetDate()Date (YYYY-MM-DD) of imaging experiment or the date at which a series of experiments began.StrColumngetDetails()Any additional imaging details.FloatColumngetDetectorDistance()The camera length (in millimeters).StrColumngetDetectorId()The value of _em_imaging.detector_id must uniquely identify the type of detector used in the experiment.StrColumngetElectronBeamTiltParams()electron beam tilt paramsFloatColumngetElectronDose()The electron dose received by the specimen (electrons per square angstrom).StrColumngetElectronSource()The source of electrons.StrColumngetEnergyFilter()The type of energy filter spectrometer apparatus.StrColumngetEnergyWindow()The energy filter range in electron volts (eV)set by spectrometer.StrColumngetEntryId()This data item is a pointer to _entry.id in the ENTRY category.StrColumngetId()The value of _em_imaging.id must uniquely identify each imaging experiment.StrColumngetIlluminationMode()The mode of illumination.StrColumngetMicroscopeId()This data item is a pointer to _em_microscope.id in the EM_MICROSCOPE category.StrColumngetMicroscopeModel()The name of the model of microscope.StrColumngetMode()The mode of imaging.FloatColumngetNominalCs()The spherical aberration coefficient (Cs) in millimeters, of the objective lens.FloatColumngetNominalDefocusMax()The maximum defocus value of the objective lens (in nanometers) used to obtain the recorded images.FloatColumngetNominalDefocusMin()The minimum defocus value of the objective lens (in nanometers) used to obtain the recorded images.IntColumngetNominalMagnification()The magnification indicated by the microscope readout.FloatColumngetRecordingTemperatureMaximum()The specimen temperature maximum (degrees Kelvin) for the duration of imaging.FloatColumngetRecordingTemperatureMinimum()The specimen temperature minimum (degrees Kelvin) for the duration of imaging.FloatColumngetResidualTilt()residual tilt of the electron beamStrColumngetSampleSupportId()This data item is a pointer to _em_sample_support.id in the EM_SAMPLE_SUPPORT category.StrColumngetScansId()The value of _em_imaging.scans_id must uniquely identify the image_scans used in the experiment.StrColumngetSpecimenHolderModel()The name of the model of specimen holder used during imaging.StrColumngetSpecimenHolderType()The type of specimen holder used during imaging.StrColumngetSpecimenId()Foreign key to the EM_SPECIMEN categoryFloatColumngetTemperature()The mean specimen stage temperature (degrees Kelvin) during imaging in the microscope.FloatColumngetTiltAngleMax()The maximum angle at which the specimen was tilted to obtain recorded images.FloatColumngetTiltAngleMin()The minimum angle at which the specimen was tilted to obtain recorded images.-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
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Method Detail
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getEntryId
public StrColumn getEntryId()
This data item is a pointer to _entry.id in the ENTRY category.- Returns:
- StrColumn
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getId
public StrColumn getId()
The value of _em_imaging.id must uniquely identify each imaging experiment.- Returns:
- StrColumn
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getAstigmatism
public StrColumn getAstigmatism()
astigmatism- Returns:
- StrColumn
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getElectronBeamTiltParams
public StrColumn getElectronBeamTiltParams()
electron beam tilt params- Returns:
- StrColumn
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getResidualTilt
public FloatColumn getResidualTilt()
residual tilt of the electron beam- Returns:
- FloatColumn
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getSampleSupportId
public StrColumn getSampleSupportId()
This data item is a pointer to _em_sample_support.id in the EM_SAMPLE_SUPPORT category.- Returns:
- StrColumn
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getDetectorId
public StrColumn getDetectorId()
The value of _em_imaging.detector_id must uniquely identify the type of detector used in the experiment.- Returns:
- StrColumn
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getScansId
public StrColumn getScansId()
The value of _em_imaging.scans_id must uniquely identify the image_scans used in the experiment.- Returns:
- StrColumn
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getMicroscopeId
public StrColumn getMicroscopeId()
This data item is a pointer to _em_microscope.id in the EM_MICROSCOPE category.- Returns:
- StrColumn
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getMicroscopeModel
public StrColumn getMicroscopeModel()
The name of the model of microscope.- Returns:
- StrColumn
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getSpecimenHolderType
public StrColumn getSpecimenHolderType()
The type of specimen holder used during imaging.- Returns:
- StrColumn
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getSpecimenHolderModel
public StrColumn getSpecimenHolderModel()
The name of the model of specimen holder used during imaging.- Returns:
- StrColumn
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getDetails
public StrColumn getDetails()
Any additional imaging details.- Returns:
- StrColumn
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getDate
public StrColumn getDate()
Date (YYYY-MM-DD) of imaging experiment or the date at which a series of experiments began.- Returns:
- StrColumn
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getAcceleratingVoltage
public IntColumn getAcceleratingVoltage()
A value of accelerating voltage (in kV) used for imaging.- Returns:
- IntColumn
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getIlluminationMode
public StrColumn getIlluminationMode()
The mode of illumination.- Returns:
- StrColumn
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getMode
public StrColumn getMode()
The mode of imaging.- Returns:
- StrColumn
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getNominalCs
public FloatColumn getNominalCs()
The spherical aberration coefficient (Cs) in millimeters, of the objective lens.- Returns:
- FloatColumn
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getNominalDefocusMin
public FloatColumn getNominalDefocusMin()
The minimum defocus value of the objective lens (in nanometers) used to obtain the recorded images.- Returns:
- FloatColumn
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getNominalDefocusMax
public FloatColumn getNominalDefocusMax()
The maximum defocus value of the objective lens (in nanometers) used to obtain the recorded images.- Returns:
- FloatColumn
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getCalibratedDefocusMin
public FloatColumn getCalibratedDefocusMin()
The minimum defocus value of the objective lens (in nanometers) used to obtain the recorded images.- Returns:
- FloatColumn
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getCalibratedDefocusMax
public FloatColumn getCalibratedDefocusMax()
The maximum defocus value of the objective lens (in nanometers) used to obtain the recorded images.- Returns:
- FloatColumn
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getTiltAngleMin
public FloatColumn getTiltAngleMin()
The minimum angle at which the specimen was tilted to obtain recorded images.- Returns:
- FloatColumn
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getTiltAngleMax
public FloatColumn getTiltAngleMax()
The maximum angle at which the specimen was tilted to obtain recorded images.- Returns:
- FloatColumn
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getNominalMagnification
public IntColumn getNominalMagnification()
The magnification indicated by the microscope readout.- Returns:
- IntColumn
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getCalibratedMagnification
public IntColumn getCalibratedMagnification()
The magnification value obtained for a known standard just prior to, during or just after the imaging experiment.- Returns:
- IntColumn
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getElectronSource
public StrColumn getElectronSource()
The source of electrons. The electron gun.- Returns:
- StrColumn
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getElectronDose
public FloatColumn getElectronDose()
The electron dose received by the specimen (electrons per square angstrom).- Returns:
- FloatColumn
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getEnergyFilter
public StrColumn getEnergyFilter()
The type of energy filter spectrometer apparatus.- Returns:
- StrColumn
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getEnergyWindow
public StrColumn getEnergyWindow()
The energy filter range in electron volts (eV)set by spectrometer.- Returns:
- StrColumn
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getCitationId
public StrColumn getCitationId()
This data item is a pointer to _citation.id in the CITATION category.- Returns:
- StrColumn
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getTemperature
public FloatColumn getTemperature()
The mean specimen stage temperature (degrees Kelvin) during imaging in the microscope.- Returns:
- FloatColumn
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getDetectorDistance
public FloatColumn getDetectorDistance()
The camera length (in millimeters). The camera length is the product of the objective focal length and the combined magnification of the intermediate and projector lenses when the microscope is operated in the diffraction mode.- Returns:
- FloatColumn
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getRecordingTemperatureMinimum
public FloatColumn getRecordingTemperatureMinimum()
The specimen temperature minimum (degrees Kelvin) for the duration of imaging.- Returns:
- FloatColumn
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getRecordingTemperatureMaximum
public FloatColumn getRecordingTemperatureMaximum()
The specimen temperature maximum (degrees Kelvin) for the duration of imaging.- Returns:
- FloatColumn
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getAlignmentProcedure
public StrColumn getAlignmentProcedure()
microscope alignment procedure- Returns:
- StrColumn
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getC2ApertureDiameter
public FloatColumn getC2ApertureDiameter()
The open diameter of the c2 condenser lens, in microns.- Returns:
- FloatColumn
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getSpecimenId
public StrColumn getSpecimenId()
Foreign key to the EM_SPECIMEN category- Returns:
- StrColumn
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getCryogen
public StrColumn getCryogen()
Cryogen type used to maintain the specimen stage temperature during imaging in the microscope.- Returns:
- StrColumn
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