Class EmImaging

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class EmImaging
    extends BaseCategory
    Data items in the EM_IMAGING category record details about the parameters used in imaging the sample in the electron microscope.
    • Constructor Detail

      • EmImaging

        public EmImaging​(String name,
                         int rowCount,
                         Object[] encodedColumns)
      • EmImaging

        public EmImaging​(String name)
    • Method Detail

      • getEntryId

        public StrColumn getEntryId()
        This data item is a pointer to _entry.id in the ENTRY category.
        Returns:
        StrColumn
      • getId

        public StrColumn getId()
        The value of _em_imaging.id must uniquely identify each imaging experiment.
        Returns:
        StrColumn
      • getAstigmatism

        public StrColumn getAstigmatism()
        astigmatism
        Returns:
        StrColumn
      • getElectronBeamTiltParams

        public StrColumn getElectronBeamTiltParams()
        electron beam tilt params
        Returns:
        StrColumn
      • getResidualTilt

        public FloatColumn getResidualTilt()
        residual tilt of the electron beam
        Returns:
        FloatColumn
      • getSampleSupportId

        public StrColumn getSampleSupportId()
        This data item is a pointer to _em_sample_support.id in the EM_SAMPLE_SUPPORT category.
        Returns:
        StrColumn
      • getDetectorId

        public StrColumn getDetectorId()
        The value of _em_imaging.detector_id must uniquely identify the type of detector used in the experiment.
        Returns:
        StrColumn
      • getScansId

        public StrColumn getScansId()
        The value of _em_imaging.scans_id must uniquely identify the image_scans used in the experiment.
        Returns:
        StrColumn
      • getMicroscopeId

        public StrColumn getMicroscopeId()
        This data item is a pointer to _em_microscope.id in the EM_MICROSCOPE category.
        Returns:
        StrColumn
      • getMicroscopeModel

        public StrColumn getMicroscopeModel()
        The name of the model of microscope.
        Returns:
        StrColumn
      • getSpecimenHolderType

        public StrColumn getSpecimenHolderType()
        The type of specimen holder used during imaging.
        Returns:
        StrColumn
      • getSpecimenHolderModel

        public StrColumn getSpecimenHolderModel()
        The name of the model of specimen holder used during imaging.
        Returns:
        StrColumn
      • getDetails

        public StrColumn getDetails()
        Any additional imaging details.
        Returns:
        StrColumn
      • getDate

        public StrColumn getDate()
        Date (YYYY-MM-DD) of imaging experiment or the date at which a series of experiments began.
        Returns:
        StrColumn
      • getAcceleratingVoltage

        public IntColumn getAcceleratingVoltage()
        A value of accelerating voltage (in kV) used for imaging.
        Returns:
        IntColumn
      • getIlluminationMode

        public StrColumn getIlluminationMode()
        The mode of illumination.
        Returns:
        StrColumn
      • getMode

        public StrColumn getMode()
        The mode of imaging.
        Returns:
        StrColumn
      • getNominalCs

        public FloatColumn getNominalCs()
        The spherical aberration coefficient (Cs) in millimeters, of the objective lens.
        Returns:
        FloatColumn
      • getNominalDefocusMin

        public FloatColumn getNominalDefocusMin()
        The minimum defocus value of the objective lens (in nanometers) used to obtain the recorded images.
        Returns:
        FloatColumn
      • getNominalDefocusMax

        public FloatColumn getNominalDefocusMax()
        The maximum defocus value of the objective lens (in nanometers) used to obtain the recorded images.
        Returns:
        FloatColumn
      • getCalibratedDefocusMin

        public FloatColumn getCalibratedDefocusMin()
        The minimum defocus value of the objective lens (in nanometers) used to obtain the recorded images.
        Returns:
        FloatColumn
      • getCalibratedDefocusMax

        public FloatColumn getCalibratedDefocusMax()
        The maximum defocus value of the objective lens (in nanometers) used to obtain the recorded images.
        Returns:
        FloatColumn
      • getTiltAngleMin

        public FloatColumn getTiltAngleMin()
        The minimum angle at which the specimen was tilted to obtain recorded images.
        Returns:
        FloatColumn
      • getTiltAngleMax

        public FloatColumn getTiltAngleMax()
        The maximum angle at which the specimen was tilted to obtain recorded images.
        Returns:
        FloatColumn
      • getNominalMagnification

        public IntColumn getNominalMagnification()
        The magnification indicated by the microscope readout.
        Returns:
        IntColumn
      • getCalibratedMagnification

        public IntColumn getCalibratedMagnification()
        The magnification value obtained for a known standard just prior to, during or just after the imaging experiment.
        Returns:
        IntColumn
      • getElectronSource

        public StrColumn getElectronSource()
        The source of electrons. The electron gun.
        Returns:
        StrColumn
      • getElectronDose

        public FloatColumn getElectronDose()
        The electron dose received by the specimen (electrons per square angstrom).
        Returns:
        FloatColumn
      • getEnergyFilter

        public StrColumn getEnergyFilter()
        The type of energy filter spectrometer apparatus.
        Returns:
        StrColumn
      • getEnergyWindow

        public StrColumn getEnergyWindow()
        The energy filter range in electron volts (eV)set by spectrometer.
        Returns:
        StrColumn
      • getCitationId

        public StrColumn getCitationId()
        This data item is a pointer to _citation.id in the CITATION category.
        Returns:
        StrColumn
      • getTemperature

        public FloatColumn getTemperature()
        The mean specimen stage temperature (degrees Kelvin) during imaging in the microscope.
        Returns:
        FloatColumn
      • getDetectorDistance

        public FloatColumn getDetectorDistance()
        The camera length (in millimeters). The camera length is the product of the objective focal length and the combined magnification of the intermediate and projector lenses when the microscope is operated in the diffraction mode.
        Returns:
        FloatColumn
      • getRecordingTemperatureMinimum

        public FloatColumn getRecordingTemperatureMinimum()
        The specimen temperature minimum (degrees Kelvin) for the duration of imaging.
        Returns:
        FloatColumn
      • getRecordingTemperatureMaximum

        public FloatColumn getRecordingTemperatureMaximum()
        The specimen temperature maximum (degrees Kelvin) for the duration of imaging.
        Returns:
        FloatColumn
      • getAlignmentProcedure

        public StrColumn getAlignmentProcedure()
        microscope alignment procedure
        Returns:
        StrColumn
      • getC2ApertureDiameter

        public FloatColumn getC2ApertureDiameter()
        The open diameter of the c2 condenser lens, in microns.
        Returns:
        FloatColumn
      • getSpecimenId

        public StrColumn getSpecimenId()
        Foreign key to the EM_SPECIMEN category
        Returns:
        StrColumn
      • getCryogen

        public StrColumn getCryogen()
        Cryogen type used to maintain the specimen stage temperature during imaging in the microscope.
        Returns:
        StrColumn